| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is ppsB [H]
Identifier: 108758362
GI number: 108758362
Start: 5291992
End: 5294277
Strand: Reverse
Name: ppsB [H]
Synonym: MXAN_4301
Alternate gene names: 108758362
Gene position: 5294277-5291992 (Counterclockwise)
Preceding gene: 108760156
Following gene: 108758543
Centisome position: 57.93
GC content: 69.16
Gene sequence:
>2286_bases TTGTTGGTTGAGAATGAAGTTCAAACAGGTGATGAGTCTGAGCGGCTTGCGAGTCGCCAGCGGAGCCGTGCCTTGATGTT GTGTGAACCCATTGCTGTGATTGGACTGGGCCTGCGTCTGCCCATGTCGGACTGCCCGCGTACGCTCTGGCAAATGCTAT GTGATGGGATTGATGCGACGGGGGACATCCCGGCCGGGCGCTGGCCTTTGTCTTCGCTCTTCGACGCGGCACCTGATCGC CCTGGGACGATTCGCAACCGCAAGGCCGGACTGATTGAAGGCGTGGAGCTGGCCGACCCCGCGGCGTTCCGGCTGACGAA GCGGGAGCTGCGGCAGATGGACCCGCAGCACCGTCTCCTCTTCGAGTGTGCATGGCATGCGCTGGAGGATGCGGGCCTGC CCTTCGACGCCGTGCGAGGGAGCCGCACGGGCGTCTTCATGGGCGTCAACTTCAGCGACTTCCAGCGGATGCTGGCGAGG GACTGGTCCTCGCTGGATGGCTATTCCGTCCTGGGAACGACGGCGTCCTTCGCGGCCAACCGGCTCTCCTACGCCTTTGA TTTCCGGGGACCCAGCACCGTGTCGAGCGTGGGGTGTGCCTCCTCGACGGTGGCCCTCCATGAGGCGTGCCGCAGCTTGA CGCTGGGCGAGGTGGAGATGGCCCTCGCCGGGGGCGTCGAGCTGATGCTGTCTCCGGACAGCAGCATCATGCTGTCCCAG GCCGGCGTGTTCTCCGAGCGGGGGCAGTGCCGGACCCTGGATGCGCAGGCGGACGGCTACGTGCGCGGGGAGGGCGCTGG CGTCGTCGTCCTCAAGCGCCTGTCCAAGGTTGAGCCCGGTGACCGCGTGTACGCGGTGATTCGGGGCAGCGCCGTCAATC ACAACGGCCGGAACGAGTGGATCATGGCGCCCAGCGCCTCGGCGCAGGCGGACGTCATCCGGCAGGCGTGTGAGCAGGGC GGGGTGGCTCCGGCGAGCATCGACTACATCGAGATGCACGGCTCGTCGTTCCTCAAGGGCGACGCGGCCGAAGCGGAGGC CATCGGGGAGGCGCTCGGGACGCAGCGGCCGGTGCCCTGCAGGCTCGGCGCCATCAGCAACAACGTGGGTTACCTGGGCG CCGCGGCGGGCATCGCGCAGTTCATCAAGGTGTGCCTGTCGCTGCACCACCGGACGTTGGCGCCGACGATTCACGTGGAT GCGCCCAACCCGCTGGTTTCGTTCGACGCGCTCGGGCTGAGCATCCAGACGGAGCTGGAGCCCTGGGCCGCGCGGGAGCC TGGCGTGCCGCTGCGAGCGGGCATCGTCTCCACGTCCCTGGGCGGTGCCAACGGCTTCGTGGTCCTGGAGGCAGCTCCGG CTGCGGTGCTGGAGCGGACGCCCGCGCCGGTCCATTTCCTGGCGCTCTCGGCGCTCTCTCAGGACGCGCTCCGTCAGCGG GCGCTCCAGCTTCGGGACTTCCTCGCCACGACGCCGGACTCGGTGGCGACGCTGGAGGACGTCTGCTTCACGGCGGCGCT CAAGCGTCAGCACCACCGGCACCGTGCCGTGGTGATTGCGGGCGACCGGGCTGGGCTCGTGGCGCTCCTGGATTCGCTCG CGACGTCGAGTGGGACGGCGCTCCTGGTTCAGGAGGGCATGCCGCTGGAGCAGGTGGAGGCCGGGCGTGTCTTCGTCGCG GATGGGACGGTGCCGCCCGAGGTGTTCCCGGTGCGTGCAGGGCGCTGCGTGAGCCTGCCGGTCTACCCCTTCCAGCGTCA GCGCCTGTGGCCCGAGTGGCTTTCACCCGATGAAGTCTGCCGCTCACCCAAGGACGCGCGGCCGGACGCCGCCACCCTGC TTCAGGCCGCCGCGGTGGCCGCCGGGGATGCTTCCCGCGTTCCCGACGTGCATGGGGAGGCCCAGATGCGGGCGTTCCTG CGGGGGCACCTCGCGGACGTGCTGGAGGTCGAGCCCGCGACGCTCGATGTGCAGGGGCGGACCTTCTTCGAACTGGGCCT GAACTCCATTGGGGCCACGTTGTTGAAGGAGCGCATCTCGCGGGCGCTCGAGCTCCCGCTGTCGACGACGCTCTTCTTCG AGCTGCCCCGGCTGGAGTCGCTGGCGAAGCGGCTGCTGTCCCTGCTGGAGGCGCGGCGTGGCCGCCTGCCGTCGGACCCG GGCGAGGTGAGTACGCCCGAGCAGGAGGAGCAGGGCCTGATGGAACGCATTGCCGGGCTGTCCGAGGACGAAGCGCGCGA GCAGATCGCCCGGACGTTGGCCGAACTCAGCCTCGAGGTCGCGTGA
Upstream 100 bases:
>100_bases TTTTGGCGATCTGTCCGTGGTGGAGGACGGAGGCCTCGGGCCGCGTGATGCCACGCCGGCCGCAGTGAAAGACGTTTCGG ACGTATGTCTTTATTGATTC
Downstream 100 bases:
>100_bases TGAACCGCAAGGACGGATTCATGGCGGAGTTGTCGCCACTCCAGCAGGCGTTGCTGACCATCGAGAAGCTGCAGAAGAAG CTGGCCACGGCCTCGAATGG
Product: polyketide synthase type I
Products: [acyl carrier protein]; acetoacetyl-ACP; CO2; [acyl carrier protein]; beta-ketoacyl-ACP [C]
Alternate protein names: NA
Number of amino acids: Translated: 761; Mature: 761
Protein sequence:
>761_residues MLVENEVQTGDESERLASRQRSRALMLCEPIAVIGLGLRLPMSDCPRTLWQMLCDGIDATGDIPAGRWPLSSLFDAAPDR PGTIRNRKAGLIEGVELADPAAFRLTKRELRQMDPQHRLLFECAWHALEDAGLPFDAVRGSRTGVFMGVNFSDFQRMLAR DWSSLDGYSVLGTTASFAANRLSYAFDFRGPSTVSSVGCASSTVALHEACRSLTLGEVEMALAGGVELMLSPDSSIMLSQ AGVFSERGQCRTLDAQADGYVRGEGAGVVVLKRLSKVEPGDRVYAVIRGSAVNHNGRNEWIMAPSASAQADVIRQACEQG GVAPASIDYIEMHGSSFLKGDAAEAEAIGEALGTQRPVPCRLGAISNNVGYLGAAAGIAQFIKVCLSLHHRTLAPTIHVD APNPLVSFDALGLSIQTELEPWAAREPGVPLRAGIVSTSLGGANGFVVLEAAPAAVLERTPAPVHFLALSALSQDALRQR ALQLRDFLATTPDSVATLEDVCFTAALKRQHHRHRAVVIAGDRAGLVALLDSLATSSGTALLVQEGMPLEQVEAGRVFVA DGTVPPEVFPVRAGRCVSLPVYPFQRQRLWPEWLSPDEVCRSPKDARPDAATLLQAAAVAAGDASRVPDVHGEAQMRAFL RGHLADVLEVEPATLDVQGRTFFELGLNSIGATLLKERISRALELPLSTTLFFELPRLESLAKRLLSLLEARRGRLPSDP GEVSTPEQEEQGLMERIAGLSEDEAREQIARTLAELSLEVA
Sequences:
>Translated_761_residues MLVENEVQTGDESERLASRQRSRALMLCEPIAVIGLGLRLPMSDCPRTLWQMLCDGIDATGDIPAGRWPLSSLFDAAPDR PGTIRNRKAGLIEGVELADPAAFRLTKRELRQMDPQHRLLFECAWHALEDAGLPFDAVRGSRTGVFMGVNFSDFQRMLAR DWSSLDGYSVLGTTASFAANRLSYAFDFRGPSTVSSVGCASSTVALHEACRSLTLGEVEMALAGGVELMLSPDSSIMLSQ AGVFSERGQCRTLDAQADGYVRGEGAGVVVLKRLSKVEPGDRVYAVIRGSAVNHNGRNEWIMAPSASAQADVIRQACEQG GVAPASIDYIEMHGSSFLKGDAAEAEAIGEALGTQRPVPCRLGAISNNVGYLGAAAGIAQFIKVCLSLHHRTLAPTIHVD APNPLVSFDALGLSIQTELEPWAAREPGVPLRAGIVSTSLGGANGFVVLEAAPAAVLERTPAPVHFLALSALSQDALRQR ALQLRDFLATTPDSVATLEDVCFTAALKRQHHRHRAVVIAGDRAGLVALLDSLATSSGTALLVQEGMPLEQVEAGRVFVA DGTVPPEVFPVRAGRCVSLPVYPFQRQRLWPEWLSPDEVCRSPKDARPDAATLLQAAAVAAGDASRVPDVHGEAQMRAFL RGHLADVLEVEPATLDVQGRTFFELGLNSIGATLLKERISRALELPLSTTLFFELPRLESLAKRLLSLLEARRGRLPSDP GEVSTPEQEEQGLMERIAGLSEDEAREQIARTLAELSLEVA >Mature_761_residues MLVENEVQTGDESERLASRQRSRALMLCEPIAVIGLGLRLPMSDCPRTLWQMLCDGIDATGDIPAGRWPLSSLFDAAPDR PGTIRNRKAGLIEGVELADPAAFRLTKRELRQMDPQHRLLFECAWHALEDAGLPFDAVRGSRTGVFMGVNFSDFQRMLAR DWSSLDGYSVLGTTASFAANRLSYAFDFRGPSTVSSVGCASSTVALHEACRSLTLGEVEMALAGGVELMLSPDSSIMLSQ AGVFSERGQCRTLDAQADGYVRGEGAGVVVLKRLSKVEPGDRVYAVIRGSAVNHNGRNEWIMAPSASAQADVIRQACEQG GVAPASIDYIEMHGSSFLKGDAAEAEAIGEALGTQRPVPCRLGAISNNVGYLGAAAGIAQFIKVCLSLHHRTLAPTIHVD APNPLVSFDALGLSIQTELEPWAAREPGVPLRAGIVSTSLGGANGFVVLEAAPAAVLERTPAPVHFLALSALSQDALRQR ALQLRDFLATTPDSVATLEDVCFTAALKRQHHRHRAVVIAGDRAGLVALLDSLATSSGTALLVQEGMPLEQVEAGRVFVA DGTVPPEVFPVRAGRCVSLPVYPFQRQRLWPEWLSPDEVCRSPKDARPDAATLLQAAAVAAGDASRVPDVHGEAQMRAFL RGHLADVLEVEPATLDVQGRTFFELGLNSIGATLLKERISRALELPLSTTLFFELPRLESLAKRLLSLLEARRGRLPSDP GEVSTPEQEEQGLMERIAGLSEDEAREQIARTLAELSLEVA
Specific function: Polyketide synthase involved in phenolpthiocerol synthesis [H]
COG id: COG3321
COG function: function code Q; Polyketide synthase modules and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 acyl carrier domain [H]
Homologues:
Organism=Homo sapiens, GI41872631, Length=422, Percent_Identity=33.8862559241706, Blast_Score=236, Evalue=4e-62, Organism=Homo sapiens, GI8923559, Length=325, Percent_Identity=24.3076923076923, Blast_Score=94, Evalue=6e-19, Organism=Homo sapiens, GI239744023, Length=106, Percent_Identity=36.7924528301887, Blast_Score=70, Evalue=9e-12, Organism=Homo sapiens, GI310129082, Length=106, Percent_Identity=36.7924528301887, Blast_Score=70, Evalue=9e-12, Organism=Homo sapiens, GI310109937, Length=106, Percent_Identity=36.7924528301887, Blast_Score=70, Evalue=9e-12, Organism=Escherichia coli, GI1787337, Length=433, Percent_Identity=23.3256351039261, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1788663, Length=329, Percent_Identity=28.2674772036474, Blast_Score=83, Evalue=8e-17, Organism=Caenorhabditis elegans, GI212642053, Length=439, Percent_Identity=31.8906605922551, Blast_Score=230, Evalue=2e-60, Organism=Caenorhabditis elegans, GI17550940, Length=540, Percent_Identity=27.5925925925926, Blast_Score=159, Evalue=6e-39, Organism=Caenorhabditis elegans, GI71983541, Length=331, Percent_Identity=22.0543806646526, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71983535, Length=240, Percent_Identity=23.75, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320904, Length=398, Percent_Identity=24.1206030150754, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI221330659, Length=435, Percent_Identity=32.183908045977, Blast_Score=222, Evalue=8e-58, Organism=Drosophila melanogaster, GI19920632, Length=435, Percent_Identity=32.183908045977, Blast_Score=221, Evalue=1e-57, Organism=Drosophila melanogaster, GI24581345, Length=429, Percent_Identity=30.7692307692308, Blast_Score=200, Evalue=3e-51, Organism=Drosophila melanogaster, GI24644341, Length=320, Percent_Identity=26.875, Blast_Score=90, Evalue=7e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001227 - InterPro: IPR009081 - InterPro: IPR014043 - InterPro: IPR016035 - InterPro: IPR000794 - InterPro: IPR018201 - InterPro: IPR014031 - InterPro: IPR014030 - InterPro: IPR016036 - InterPro: IPR016040 - InterPro: IPR006163 - InterPro: IPR020801 - InterPro: IPR020841 - InterPro: IPR013968 - InterPro: IPR020806 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF00698 Acyl_transf_1; PF00109 ketoacyl-synt; PF02801 Ketoacyl-synt_C; PF08659 KR; PF00550 PP-binding [H]
EC number: 2.3.1.41 [C]
Molecular weight: Translated: 81651; Mature: 81651
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS50075 ACP_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVENEVQTGDESERLASRQRSRALMLCEPIAVIGLGLRLPMSDCPRTLWQMLCDGIDAT CCCCCCCCCCCHHHHHHHHHHHCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC GDIPAGRWPLSSLFDAAPDRPGTIRNRKAGLIEGVELADPAAFRLTKRELRQMDPQHRLL CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH FECAWHALEDAGLPFDAVRGSRTGVFMGVNFSDFQRMLARDWSSLDGYSVLGTTASFAAN HHHHHHHHHHCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEECCCHHHHHHH RLSYAFDFRGPSTVSSVGCASSTVALHEACRSLTLGEVEMALAGGVELMLSPDSSIMLSQ HHCEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCEEEEECCCCCEEEEC AGVFSERGQCRTLDAQADGYVRGEGAGVVVLKRLSKVEPGDRVYAVIRGSAVNHNGRNEW CCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHCCCCCCEEEEEEECCEECCCCCCCE IMAPSASAQADVIRQACEQGGVAPASIDYIEMHGSSFLKGDAAEAEAIGEALGTQRPVPC EECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCE RLGAISNNVGYLGAAAGIAQFIKVCLSLHHRTLAPTIHVDAPNPLVSFDALGLSIQTELE EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEHHHCCEEEEECCC PWAAREPGVPLRAGIVSTSLGGANGFVVLEAAPAAVLERTPAPVHFLALSALSQDALRQR CCCCCCCCCCEEHHHEECCCCCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHH ALQLRDFLATTPDSVATLEDVCFTAALKRQHHRHRAVVIAGDRAGLVALLDSLATSSGTA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCE LLVQEGMPLEQVEAGRVFVADGTVPPEVFPVRAGRCVSLPVYPFQRQRLWPEWLSPDEVC EEEECCCCHHHHCCCEEEEECCCCCCCEEEECCCCEEECCCCCCHHHCCCCCCCCHHHHH RSPKDARPDAATLLQAAAVAAGDASRVPDVHGEAQMRAFLRGHLADVLEVEPATLDVQGR CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC TFFELGLNSIGATLLKERISRALELPLSTTLFFELPRLESLAKRLLSLLEARRGRLPSDP CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECHHHHHHHHHHHHHHHHHCCCCCCCC GEVSTPEQEEQGLMERIAGLSEDEAREQIARTLAELSLEVA CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLVENEVQTGDESERLASRQRSRALMLCEPIAVIGLGLRLPMSDCPRTLWQMLCDGIDAT CCCCCCCCCCCHHHHHHHHHHHCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC GDIPAGRWPLSSLFDAAPDRPGTIRNRKAGLIEGVELADPAAFRLTKRELRQMDPQHRLL CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH FECAWHALEDAGLPFDAVRGSRTGVFMGVNFSDFQRMLARDWSSLDGYSVLGTTASFAAN HHHHHHHHHHCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEECCCHHHHHHH RLSYAFDFRGPSTVSSVGCASSTVALHEACRSLTLGEVEMALAGGVELMLSPDSSIMLSQ HHCEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCEEEEECCCCCEEEEC AGVFSERGQCRTLDAQADGYVRGEGAGVVVLKRLSKVEPGDRVYAVIRGSAVNHNGRNEW CCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHCCCCCCEEEEEEECCEECCCCCCCE IMAPSASAQADVIRQACEQGGVAPASIDYIEMHGSSFLKGDAAEAEAIGEALGTQRPVPC EECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCE RLGAISNNVGYLGAAAGIAQFIKVCLSLHHRTLAPTIHVDAPNPLVSFDALGLSIQTELE EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEHHHCCEEEEECCC PWAAREPGVPLRAGIVSTSLGGANGFVVLEAAPAAVLERTPAPVHFLALSALSQDALRQR CCCCCCCCCCEEHHHEECCCCCCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHH ALQLRDFLATTPDSVATLEDVCFTAALKRQHHRHRAVVIAGDRAGLVALLDSLATSSGTA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCE LLVQEGMPLEQVEAGRVFVADGTVPPEVFPVRAGRCVSLPVYPFQRQRLWPEWLSPDEVC EEEECCCCHHHHCCCEEEEECCCCCCCEEEECCCCEEECCCCCCHHHCCCCCCCCHHHHH RSPKDARPDAATLLQAAAVAAGDASRVPDVHGEAQMRAFLRGHLADVLEVEPATLDVQGR CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC TFFELGLNSIGATLLKERISRALELPLSTTLFFELPRLESLAKRLLSLLEARRGRLPSDP CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECHHHHHHHHHHHHHHHHHCCCCCCCC GEVSTPEQEEQGLMERIAGLSEDEAREQIARTLAELSLEVA CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: None [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.04 {acetyl-ACP}} 0.031 {acetyl-ACP}} 0.138 {cis-9-hexadecenoyl-ACP}} 0.017 {cis-9-hexadecenoyl-ACP}} 0.012 {cis-3-decenoyl-ACP}} [C]
Substrates: acetyl-ACP; malonyl-ACP; acyl-ACP [C]
Specific reaction: acetyl-ACP + malonyl-ACP = [acyl carrier protein] + acetoacetyl-ACP + CO2 acyl-ACP + malonyl-ACP = [acyl carrier protein] + beta-ketoacyl-ACP + CO2 [C]
General reaction: Acyl group transfer [C]
Inhibitor: Acetyl-CoA; Acyl-CoA; Iodoacetamide; N-Ethyl maleimide acyl -ACP-derivatives protect, malonyl-ACP-decarboxylation, Cerulenin [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]