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The map label for this gene is rraA [C]

Identifier: 108758203

GI number: 108758203

Start: 451737

End: 452234

Strand: Reverse

Name: rraA [C]

Synonym: MXAN_0390

Alternate gene names: 108758203

Gene position: 452234-451737 (Counterclockwise)

Preceding gene: 108763103

Following gene: 108760281

Centisome position: 4.95

GC content: 69.08

Gene sequence:

>498_bases
ATGAGCACGTTCACCGACTTCAAAACGGCCGACCTCTGCGATGCCCACGCGGGCACGCCGCGGTTCCAGATTGCCGAGCC
CGGGTTCCAGGACTACGGCGGCGTCCGGACCTTCGCGGGTCCCATCAGCACGGTGCGGGCACCCGAGGACAACTCCCTCG
TGCGCAAGGCCTTGGAGGAGCCCGGCCAGGGCCGGGTGCTGGTAGTGGACGGAGGAGGCAGCCGCCGCTGCGCGCTCGTG
GGAGACCAGCTCGCGTTGCTCGCCCAGCAGAATGGCTGGGCGGGCGTGGTGGTGAATGGCTGCATCCGAGACGCCGAGGA
CGTGGGCCGCATGCGCATCGGCGTCAAGGCGCTGGGCACCCACCCGCTCAAGAGCCTCAAACGCAACGAGGGACAACGTG
ACGTGGAGGTCCGCTTCGCCGGAGTCACCTTCCGCCCCGGCCACTACGTCTACGCGGATCTGGACGGCATCGTCACCTCC
GAGTCGCCCCTGGGCTGA

Upstream 100 bases:

>100_bases
ACAGGAACTGCTGGGTGCGTTCACGTTGCAACTGACGGAGGAGGACCTCCGCGCCCTGGACGTTGCGTCGTCCCGCGAGG
CCTGAGAAGGCTCGAAGCCC

Downstream 100 bases:

>100_bases
CGCCAGAGGCCCCGGGCGGAAGTGCGGGCACTACCCGCGTCGCCACCACTTCCGCCGCGCGGCCCTCACATCGGACCAGT
CCACCAGGCAGTCGTGCACG

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MSTFTDFKTADLCDAHAGTPRFQIAEPGFQDYGGVRTFAGPISTVRAPEDNSLVRKALEEPGQGRVLVVDGGGSRRCALV
GDQLALLAQQNGWAGVVVNGCIRDAEDVGRMRIGVKALGTHPLKSLKRNEGQRDVEVRFAGVTFRPGHYVYADLDGIVTS
ESPLG

Sequences:

>Translated_165_residues
MSTFTDFKTADLCDAHAGTPRFQIAEPGFQDYGGVRTFAGPISTVRAPEDNSLVRKALEEPGQGRVLVVDGGGSRRCALV
GDQLALLAQQNGWAGVVVNGCIRDAEDVGRMRIGVKALGTHPLKSLKRNEGQRDVEVRFAGVTFRPGHYVYADLDGIVTS
ESPLG
>Mature_164_residues
STFTDFKTADLCDAHAGTPRFQIAEPGFQDYGGVRTFAGPISTVRAPEDNSLVRKALEEPGQGRVLVVDGGGSRRCALVG
DQLALLAQQNGWAGVVVNGCIRDAEDVGRMRIGVKALGTHPLKSLKRNEGQRDVEVRFAGVTFRPGHYVYADLDGIVTSE
SPLG

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=158, Percent_Identity=44.9367088607595, Blast_Score=136, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17642; Mature: 17511

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFTDFKTADLCDAHAGTPRFQIAEPGFQDYGGVRTFAGPISTVRAPEDNSLVRKALEE
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHCC
PGQGRVLVVDGGGSRRCALVGDQLALLAQQNGWAGVVVNGCIRDAEDVGRMRIGVKALGT
CCCCEEEEEECCCCCEEEEECCCEEEEECCCCCEEEEEECCCCCHHHHHHEEECEEECCC
HPLKSLKRNEGQRDVEVRFAGVTFRPGHYVYADLDGIVTSESPLG
CHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEECCCEEECCCCCC
>Mature Secondary Structure 
STFTDFKTADLCDAHAGTPRFQIAEPGFQDYGGVRTFAGPISTVRAPEDNSLVRKALEE
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEECCCCCHHHHHHHHCC
PGQGRVLVVDGGGSRRCALVGDQLALLAQQNGWAGVVVNGCIRDAEDVGRMRIGVKALGT
CCCCEEEEEECCCCCEEEEECCCEEEEECCCCCEEEEEECCCCCHHHHHHEEECEEECCC
HPLKSLKRNEGQRDVEVRFAGVTFRPGHYVYADLDGIVTSESPLG
CHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEECCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA