Click here to switch to the map view.

The map label for this gene is yggW [C]

Identifier: 108758188

GI number: 108758188

Start: 1333586

End: 1334791

Strand: Direct

Name: yggW [C]

Synonym: MXAN_1143

Alternate gene names: 108758188

Gene position: 1333586-1334791 (Clockwise)

Preceding gene: 108763508

Following gene: 108759084

Centisome position: 14.59

GC content: 73.63

Gene sequence:

>1206_bases
ATGCCTTTCGACGCGCCAGTGGATGCCCTCACGGGAATGCCGGCGGCCCGCTTCGGGCTGTACCTGCATTTCCCGTACTG
CCTCGCGAAGTGCCCGTACTGCGACTTCGCGGTGGCGGTGGCGCGGCAGGTGCCGGAGGAGCGCTACGCCCGCGCGGTGC
TGGCGGAGCTGGACACCCGGCTGGCCGCCGAGCCCTCGCTCGCGGGGAAGGTGCTCGACTCCATCTTCCTGGGCGGTGGG
ACGCCGTCCCTGTGGCACCCGCGCTACGTGGCCCAGGTGCTGGATGGCATCGCCGCGAGGCTGCGGGTGGCGCCTGGCGT
GGAGGTGTCGCTGGAGGGCAATCCGGAGCGCGCGGACGCGGAGCGCTTCGCGGGCTACCGCGCGGCGGGGGTGAACCGGC
TGTCGCTGGGCGTGCAGTCCTTCCAGCCGGAGACGCTCAAGGCGTTGGGGCGCGCGCATGACGCGGCCATGGTGGAAGGG
GCCGTGGACGCGGCCCGGAGCGCGGCCTTCCCGGTGGTGGCCATGGACTTCATCTATGGCGTGCACGGGCAGACGGTGGC
GCAGGTGGAGGCGGATGCGCGCCGGGCGGTGGCGCTGGCCCCCGAGCACCTGTCCACGTACGCGCTGACGGTGGAGCGCG
ACGTGCTGGCGGAGGACACGCCCCTGTCGAAGCGGCTCAAGCGCGGTGAGCTGGAGCTGCCGCCCGACGACACCGTGGTC
GACATGGCGCGGGTGGTGCGCGAGGTGTACGGGGCGGCGGGGCTGCACCGCTACGAGGTGTCCAACCACGCGCGGCCAGG
GTTCAGCTCGCGCCACAACGCGCTGTACTGGACCGGCGGGGAGTACCTGGCGCTGGGCGTGGGGGCCACGGGCATGTTGC
TGTCGCCCCAGCCGCACCGGTACGTGAACCTGCGCAGCGCGGAGCGCTACCTCGTGGAGGCGGAGGCGGGGCGGCTGCCA
GAGGAAGGCCGCGAGCCGCTGGGCCCGGAGGAGCTCTTCGCGGAGCGCCTGGCCATGGGCCTGCGGCTGGTGTCGGGCGT
GGACTGGGAGGCCGTCTGCGAGCGATATGGACAGCCGGTGGAGCCCCGGCGGGCGGAAGTCGCGCGGCTGGTGGCGCACG
GCTTCGCGACGCTGCGGGACGGGCGGCTGGCATTGACGGAGAAGGGCGCGGACGTCCACAGCGCCGTGTGCGCGCGGCTG
CTCTAG

Upstream 100 bases:

>100_bases
GTGGCGGCCGAGACAGCGCTCGAGAACGCGGCGGGCTACAAGGCGAAGATTGCCCGGCTGGAGGCGCAATTGAAGGGCAA
GAGGTAGAGGTTTTTCCTTC

Downstream 100 bases:

>100_bases
GCGGCGTCCACTGGAACGGATTTCGAGAGGCGTATGAGCAAGTGGATATTGTGGCTGTTCCTCACCCTGCTGACGGGCAG
CCCGCTGCTGTCGCTGGGCC

Product: putative oxygen-independent coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MPFDAPVDALTGMPAARFGLYLHFPYCLAKCPYCDFAVAVARQVPEERYARAVLAELDTRLAAEPSLAGKVLDSIFLGGG
TPSLWHPRYVAQVLDGIAARLRVAPGVEVSLEGNPERADAERFAGYRAAGVNRLSLGVQSFQPETLKALGRAHDAAMVEG
AVDAARSAAFPVVAMDFIYGVHGQTVAQVEADARRAVALAPEHLSTYALTVERDVLAEDTPLSKRLKRGELELPPDDTVV
DMARVVREVYGAAGLHRYEVSNHARPGFSSRHNALYWTGGEYLALGVGATGMLLSPQPHRYVNLRSAERYLVEAEAGRLP
EEGREPLGPEELFAERLAMGLRLVSGVDWEAVCERYGQPVEPRRAEVARLVAHGFATLRDGRLALTEKGADVHSAVCARL
L

Sequences:

>Translated_401_residues
MPFDAPVDALTGMPAARFGLYLHFPYCLAKCPYCDFAVAVARQVPEERYARAVLAELDTRLAAEPSLAGKVLDSIFLGGG
TPSLWHPRYVAQVLDGIAARLRVAPGVEVSLEGNPERADAERFAGYRAAGVNRLSLGVQSFQPETLKALGRAHDAAMVEG
AVDAARSAAFPVVAMDFIYGVHGQTVAQVEADARRAVALAPEHLSTYALTVERDVLAEDTPLSKRLKRGELELPPDDTVV
DMARVVREVYGAAGLHRYEVSNHARPGFSSRHNALYWTGGEYLALGVGATGMLLSPQPHRYVNLRSAERYLVEAEAGRLP
EEGREPLGPEELFAERLAMGLRLVSGVDWEAVCERYGQPVEPRRAEVARLVAHGFATLRDGRLALTEKGADVHSAVCARL
L
>Mature_400_residues
PFDAPVDALTGMPAARFGLYLHFPYCLAKCPYCDFAVAVARQVPEERYARAVLAELDTRLAAEPSLAGKVLDSIFLGGGT
PSLWHPRYVAQVLDGIAARLRVAPGVEVSLEGNPERADAERFAGYRAAGVNRLSLGVQSFQPETLKALGRAHDAAMVEGA
VDAARSAAFPVVAMDFIYGVHGQTVAQVEADARRAVALAPEHLSTYALTVERDVLAEDTPLSKRLKRGELELPPDDTVVD
MARVVREVYGAAGLHRYEVSNHARPGFSSRHNALYWTGGEYLALGVGATGMLLSPQPHRYVNLRSAERYLVEAEAGRLPE
EGREPLGPEELFAERLAMGLRLVSGVDWEAVCERYGQPVEPRRAEVARLVAHGFATLRDGRLALTEKGADVHSAVCARLL

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=288, Percent_Identity=38.5416666666667, Blast_Score=173, Evalue=3e-43,
Organism=Escherichia coli, GI1789325, Length=380, Percent_Identity=33.4210526315789, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI87082341, Length=300, Percent_Identity=25.3333333333333, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 43473; Mature: 43342

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFDAPVDALTGMPAARFGLYLHFPYCLAKCPYCDFAVAVARQVPEERYARAVLAELDTR
CCCCCCHHHHHCCCHHHHHHEEECHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
LAAEPSLAGKVLDSIFLGGGTPSLWHPRYVAQVLDGIAARLRVAPGVEVSLEGNPERADA
HHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCHHHH
ERFAGYRAAGVNRLSLGVQSFQPETLKALGRAHDAAMVEGAVDAARSAAFPVVAMDFIYG
HHHCCHHHCCCCHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
VHGQTVAQVEADARRAVALAPEHLSTYALTVERDVLAEDTPLSKRLKRGELELPPDDTVV
CCCCCHHHHHHHHHHHHEECHHHHHHEEEEEEHHHHCCCCCHHHHHHCCCCCCCCCCHHH
DMARVVREVYGAAGLHRYEVSNHARPGFSSRHNALYWTGGEYLALGVGATGMLLSPQPHR
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCEEECCCCCC
YVNLRSAERYLVEAEAGRLPEEGREPLGPEELFAERLAMGLRLVSGVDWEAVCERYGQPV
EEECCCHHHHEEEHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
EPRRAEVARLVAHGFATLRDGRLALTEKGADVHSAVCARLL
CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure 
PFDAPVDALTGMPAARFGLYLHFPYCLAKCPYCDFAVAVARQVPEERYARAVLAELDTR
CCCCCHHHHHCCCHHHHHHEEECHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
LAAEPSLAGKVLDSIFLGGGTPSLWHPRYVAQVLDGIAARLRVAPGVEVSLEGNPERADA
HHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCHHHH
ERFAGYRAAGVNRLSLGVQSFQPETLKALGRAHDAAMVEGAVDAARSAAFPVVAMDFIYG
HHHCCHHHCCCCHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
VHGQTVAQVEADARRAVALAPEHLSTYALTVERDVLAEDTPLSKRLKRGELELPPDDTVV
CCCCCHHHHHHHHHHHHEECHHHHHHEEEEEEHHHHCCCCCHHHHHHCCCCCCCCCCHHH
DMARVVREVYGAAGLHRYEVSNHARPGFSSRHNALYWTGGEYLALGVGATGMLLSPQPHR
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCEEECCCCCC
YVNLRSAERYLVEAEAGRLPEEGREPLGPEELFAERLAMGLRLVSGVDWEAVCERYGQPV
EEECCCHHHHEEEHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
EPRRAEVARLVAHGFATLRDGRLALTEKGADVHSAVCARLL
CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]