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The map label for this gene is algU [H]

Identifier: 108758181

GI number: 108758181

Start: 5846306

End: 5846977

Strand: Reverse

Name: algU [H]

Synonym: MXAN_4662

Alternate gene names: 108758181

Gene position: 5846977-5846306 (Counterclockwise)

Preceding gene: 108761776

Following gene: 108758253

Centisome position: 63.97

GC content: 69.64

Gene sequence:

>672_bases
GTGGGCCGGGTGAGGGTGGCTCCAAGGAGAGTTGGGGGAGTGTTGGGACCGGAAACCTCAGACGAGCGGCTGATGCTCGC
CTTCCAGGCGGGGGACGCGCGCGCGTTCGAGGCGCTGGTGCGCAAGCACCGGACGCCGGTGTTCAACTTCATCCTTCGCT
TCACGGGGCACCGGGCACGGGCGGAGGACGTGCTGCAGGAGACGTGGCTGAAGGTGGTTCGGAGCGCCGGCGACTACACG
CCCAAGGCGAAGTTCACGACCTGGCTCTACACGATTGCGAGGAACCTCTGCGTGGACAGCGCGCGCAAAGAGAGCTACCG
CCAGGCGTCTTCCCTGGAGGCACCCGCCCCGGGAGCGGAGCGGGACGAGTCGCGCCCCCTGGGGGAAGGCCTGCCGGACG
CGGGGGCCAGCCCGGAGCGCGGCGCCTACAACGCCCGGTTGCGTCCCCTGTTGGAGCGAGCCCTGGCGACGCTCCCAGAC
GAGCAGCGTGAGGTCTTCACCCTGCGCGAGTACAGCGGCATCCCCTTCAAGGACATCGCGGAGGTGACGGGAGTGTCCGA
GAACACGGTGAAGAGCCGCATGCGCTACGCGCTCGACGGGCTTCGCCGCCGGCTGGCGGAGATGGGCGTCGACGGCGACC
TCGCCGAGGACGGAAGGACGGTGGTGGGATGA

Upstream 100 bases:

>100_bases
ACAGCGGTGGCCGTCCCTGTCATTCTCGCCACTTACCAGAGACCTCGCCGGGGATAGACCCTGGCGGCCCGTCGCACGTT
CACTGTGCACGGGTGGCGGA

Downstream 100 bases:

>100_bases
AGCCGCAGAATCCGCATGCGCAGGAGGACCGGCTGCTCGACTTCGCCTATGGCGAACTGCCGGTGCCCGAGGCCCGCCTC
GTGGAAGCCCACCTGGAGAG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGRVRVAPRRVGGVLGPETSDERLMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVRSAGDYT
PKAKFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAERDESRPLGEGLPDAGASPERGAYNARLRPLLERALATLPD
EQREVFTLREYSGIPFKDIAEVTGVSENTVKSRMRYALDGLRRRLAEMGVDGDLAEDGRTVVG

Sequences:

>Translated_223_residues
MGRVRVAPRRVGGVLGPETSDERLMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVRSAGDYT
PKAKFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAERDESRPLGEGLPDAGASPERGAYNARLRPLLERALATLPD
EQREVFTLREYSGIPFKDIAEVTGVSENTVKSRMRYALDGLRRRLAEMGVDGDLAEDGRTVVG
>Mature_222_residues
GRVRVAPRRVGGVLGPETSDERLMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVRSAGDYTP
KAKFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAERDESRPLGEGLPDAGASPERGAYNARLRPLLERALATLPDE
QREVFTLREYSGIPFKDIAEVTGVSENTVKSRMRYALDGLRRRLAEMGVDGDLAEDGRTVVG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=189, Percent_Identity=30.1587301587302, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 24791; Mature: 24660

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRVRVAPRRVGGVLGPETSDERLMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRAR
CCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCCHHH
AEDVLQETWLKVVRSAGDYTPKAKFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RDESRPLGEGLPDAGASPERGAYNARLRPLLERALATLPDEQREVFTLREYSGIPFKDIA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
EVTGVSENTVKSRMRYALDGLRRRLAEMGVDGDLAEDGRTVVG
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GRVRVAPRRVGGVLGPETSDERLMLAFQAGDARAFEALVRKHRTPVFNFILRFTGHRAR
CCCCCCHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCCHHH
AEDVLQETWLKVVRSAGDYTPKAKFTTWLYTIARNLCVDSARKESYRQASSLEAPAPGAE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RDESRPLGEGLPDAGASPERGAYNARLRPLLERALATLPDEQREVFTLREYSGIPFKDIA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
EVTGVSENTVKSRMRYALDGLRRRLAEMGVDGDLAEDGRTVVG
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]