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The map label for this gene is araC [C]

Identifier: 108758050

GI number: 108758050

Start: 2037464

End: 2038333

Strand: Reverse

Name: araC [C]

Synonym: MXAN_1719

Alternate gene names: 108758050

Gene position: 2038333-2037464 (Counterclockwise)

Preceding gene: 108759655

Following gene: 108758428

Centisome position: 22.3

GC content: 65.98

Gene sequence:

>870_bases
ATGATTCTCGCGCGCCAGCCTCGGAGCCCCACTCTGGCTCCTCTCGTGGAATCCCTCTGGACATACGACGGGCAGCTCGC
CCACGGCTTCGAGCGCATGCTGCCGTCTGGCCGTATGCAGCTCCTGGTCAATCTGCATGAGGACACGTTCCGGGACTACA
GGCTCGACGGCCGCCTTGCACACAAGACTCGTGGTGTAGCGATTCAGGGCGCCTACACCGCACCGAGAGTCGTCGACACT
GCCTGCCAGCGCTCCATCTGCGGGGTGAGCTTCGCCCCCGCGAGTGCGTCGCCGTTTCTGGGCATGCCGGCCTCGGAACT
TACCGGGAAGGTCGTCGACCTCTACGAAATCTGGGGGCGTGACGGCACCATCCTTCGTGAGCGCCTGCTGCAAGCCTCCA
CTCCCGCGGCCCGGCTCGACGTGCTCGAGGCGGCGCTGCTCGCACGGGCACGCTCGTCCAAGCCTCGCGACGAAGCAGTG
GCGGTCGCGTGCTCGCTGTTGATGGGCGGCGCGAGCGTCCGTGCCGTAGGAGTTCGACTCGGCCTTTCGCCGCGCCGGCT
CATTGAGCGGTTTCAAGTACATGTCGGCATCAAGCCCAAGCTCTTCGCGCGCATCGCCAGGTTCCAGCGCGTGCTCGAAT
CGGCCGGGGGGGAGATGACCTGGACCACCTTGGCCGGTGAGCACGGGTTTTCGGACCAGGCACATCTGGTCCGCGAGTTC
AGGGCATTCTCGGGAGCCACTCCCGCCGCGTATCGCCCTCGGTCGGAGGAGGCTCGCAACCACGTACCTCTCGACGAGCG
GCAATTTCCTTCAATACGAGGCGGGCCGCCCCGGGGCACATTGCGCCAATGTCCCCAAACGAAACCCTGA

Upstream 100 bases:

>100_bases
TAAAGAGCGGGAGCGCCACGAAATCGGGGCTGGCTCAGCAGCAGGAGGACTCCGTATCCGTCGCAGTGGTGCATCCCGGC
TCTGTTACCGTCGCGCTGCC

Downstream 100 bases:

>100_bases
CCGAAGTCCAACCGCTTCCCCTTGAGGACCGACCGTACGGCAAGCTCGAGGGTCGCGTGCGCGACCTGTTCAGTCACATG
TGGCTTCTCGGCGGGCAGAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MILARQPRSPTLAPLVESLWTYDGQLAHGFERMLPSGRMQLLVNLHEDTFRDYRLDGRLAHKTRGVAIQGAYTAPRVVDT
ACQRSICGVSFAPASASPFLGMPASELTGKVVDLYEIWGRDGTILRERLLQASTPAARLDVLEAALLARARSSKPRDEAV
AVACSLLMGGASVRAVGVRLGLSPRRLIERFQVHVGIKPKLFARIARFQRVLESAGGEMTWTTLAGEHGFSDQAHLVREF
RAFSGATPAAYRPRSEEARNHVPLDERQFPSIRGGPPRGTLRQCPQTKP

Sequences:

>Translated_289_residues
MILARQPRSPTLAPLVESLWTYDGQLAHGFERMLPSGRMQLLVNLHEDTFRDYRLDGRLAHKTRGVAIQGAYTAPRVVDT
ACQRSICGVSFAPASASPFLGMPASELTGKVVDLYEIWGRDGTILRERLLQASTPAARLDVLEAALLARARSSKPRDEAV
AVACSLLMGGASVRAVGVRLGLSPRRLIERFQVHVGIKPKLFARIARFQRVLESAGGEMTWTTLAGEHGFSDQAHLVREF
RAFSGATPAAYRPRSEEARNHVPLDERQFPSIRGGPPRGTLRQCPQTKP
>Mature_289_residues
MILARQPRSPTLAPLVESLWTYDGQLAHGFERMLPSGRMQLLVNLHEDTFRDYRLDGRLAHKTRGVAIQGAYTAPRVVDT
ACQRSICGVSFAPASASPFLGMPASELTGKVVDLYEIWGRDGTILRERLLQASTPAARLDVLEAALLARARSSKPRDEAV
AVACSLLMGGASVRAVGVRLGLSPRRLIERFQVHVGIKPKLFARIARFQRVLESAGGEMTWTTLAGEHGFSDQAHLVREF
RAFSGATPAAYRPRSEEARNHVPLDERQFPSIRGGPPRGTLRQCPQTKP

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31771; Mature: 31771

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILARQPRSPTLAPLVESLWTYDGQLAHGFERMLPSGRMQLLVNLHEDTFRDYRLDGRLA
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEHHHHHHHHHCCCCCHH
HKTRGVAIQGAYTAPRVVDTACQRSICGVSFAPASASPFLGMPASELTGKVVDLYEIWGR
HHHCCEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
DGTILRERLLQASTPAARLDVLEAALLARARSSKPRDEAVAVACSLLMGGASVRAVGVRL
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHEEEHEEE
GLSPRRLIERFQVHVGIKPKLFARIARFQRVLESAGGEMTWTTLAGEHGFSDQAHLVREF
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
RAFSGATPAAYRPRSEEARNHVPLDERQFPSIRGGPPRGTLRQCPQTKP
HHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MILARQPRSPTLAPLVESLWTYDGQLAHGFERMLPSGRMQLLVNLHEDTFRDYRLDGRLA
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEHHHHHHHHHCCCCCHH
HKTRGVAIQGAYTAPRVVDTACQRSICGVSFAPASASPFLGMPASELTGKVVDLYEIWGR
HHHCCEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
DGTILRERLLQASTPAARLDVLEAALLARARSSKPRDEAVAVACSLLMGGASVRAVGVRL
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHEEEHEEE
GLSPRRLIERFQVHVGIKPKLFARIARFQRVLESAGGEMTWTTLAGEHGFSDQAHLVREF
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
RAFSGATPAAYRPRSEEARNHVPLDERQFPSIRGGPPRGTLRQCPQTKP
HHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7517396 [H]