| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is comEC [H]
Identifier: 108757945
GI number: 108757945
Start: 3064607
End: 3067075
Strand: Reverse
Name: comEC [H]
Synonym: MXAN_2626
Alternate gene names: 108757945
Gene position: 3067075-3064607 (Counterclockwise)
Preceding gene: 108762453
Following gene: 108757159
Centisome position: 33.56
GC content: 71.49
Gene sequence:
>2469_bases GTGGAACGTCATGCTTGGCGCGACCTGGGCGCGCGTCCTCTCTTCTTTCCCGCCCTGAGCCTGTCACTCGGAGCCCTCTG CGCCCCGGTAACAAGCGCGTACGCCGAGCCATTTCTCGTTTGTGGGCTTTTACTGGGAGCGCTCGGGCTGACGCTTGCCC GGCTGCCTAGTGCGCATCTCGCCGTGCTGGCGTCGCTCTGGGCGGCGGGCGCGGGGCTGGCGCGCTGGGAATCCCAGGTG GATGTGCCGGCGGAGTTGACCCAAGGCAACACCATCGTCATCGAGGGGGAAACGGAGCGGGTGGACCGCTTCGACGGGAC GACGCGTGTCCGATTGGCCGTCGCGCGGGCGGGCGTCTCTCCCGGGCCGCTCGCGCCCGTACGGTTCCGGATGAACCTGT CGCTGCGCGGCGATCCACCGCCGCTCCTGCCCGGGCAACGTGTCCGGGCAGAGACGAAGCTGCAGCCAGACGCGCCCCCA TCAAACCCAGGCGAGAAGGATTTCGGAGCAGCGCGACGGCGACAGGGCGTGGCCTTCACCGGTGGCATGGACGCGCGGCG CCTGATGGTGCTCTCCCCTGCCCCGGCGTGGCGGGTGTCATTGGAGGACACGCGCACGCGGCTGGCGGCGGCGGTCCATG CGGTGTCGCCTTCGACGGATGCGGCGGCGCTCTTCCTCACCCTGGCGGCGGGGCAACGCGCGGCGCTGGATGACTCGTGG GAAGAGGCCTTCTCTCGCGCAGGACTGGCCCACGTGTTGAGTGTCAGCGGGCTGCACGTGGCGGCGTTGGCGCTGATGAC GCTCGCGGTGCTGCGGCGGCTGGTGGTGCGCACCGGCGAGCGGTGGCGGATGCTGGATGCTCGGCAGGTGGCGGCCCCCG CGGCGGTGCCCTTCGTCTGGGCCTACGTCGTGTTCACTGACAACCAGCCGCCCGCGGTGCGCTCCGCGGTGATGGCCACG GTGGTGCTGCTGGGGCTCGCGCTGTGGCGGCGCGCGGACGGGCTCAACGGACTGGCCGCCGCGGCCGTGGTGCTGGTGGC CTGGGCGCCCTCCAGCGTGGCCGACCTGTCGCTGCGGCTGTCGTTCCTCGCCGTACTGGGACTGGTGCTGCTGTCACCGC CGCTGCGGCAGGCGCTGCCCCTGGCCGAGCCCGACCCGTCCGAACCCCACCGCGTCCGGCGCTGGTGGGGACAGGCGCAG GAGACGGTGGCTCAGACGCTGTGCGCGAGCGCGGCCGCGACGCTGTCGGGACTCCCCATCGTCGCGGCGACCTTCGGACG GGTGAGTATCGCGGGGCTCATCTCGAACGTGGTCGCCCTGCCCTTGTGCGGGCTGCTCACGGGCCTGGCCGCGGGTGGCG CCGCGCTCTTCGTCGTCGCCCCCGTGCTGGCGACACCGGTGCTGTGGGCCGGCGCTTGGGCGTCCGAGCTGCTGCTGGTC ATCACCCGGCTCTTCGCGGCGGCGCCGCTGGCCTCGGTCGAGGTGCCGTCACTGGGCTTCCTGTCGGCGCTCTACGCGGC GGGACTGCTGACGTGGGCGCTCGGCACGGGGCGCTGGCGGCTGGGTGGTTTGTTGGCTCCCGCGGCCGTCGTCGCCGCCA TCCTGGCACCGGTGCTCACGCCGCAGCCCGGGCTCCGCGTCACCTTTCTCTACGTGGGTCAGGGCGACGGCGTGGTCGTC AGCTCCGGTGGTGAGCACATGCTCGTGGATGGCGGCGGCGTTCCAGGCGGCATGGACACCGCGGAACGCTTCATCCTCCC GTACCTGAAGCACGCGGGCATCTCCCAGTTGGACCTCGCCGTGCTGTCACATCCGCATCCGGACCATGCGCTCGGGCTGG CATCCGCGTTGAAACAGATTCCCACCCAGCGACTGTGGATGCCCGCGGGCGACGGAGACGGCCCGCTCTCGCGGCAGGTG GTGGCTGCGGCGGGGACGGCGCTCGTGGAGGAAGTCGAGGTGGGCCATCCACCCCTGCGCCTGGGCGAGGCGACCATCGA AGTGCTCGGGCCACCAGCGTTGGAGACACGCGACCTGCTGGAAGGCGCGAACGACCGAAGCGTGGTGCTCCTTGTGCGCC ACGGCGACGTCACCGTGCTGCTCACGGGCGACGTGGAGGCGGATGGCGAGGAGTCCCTGGCGGAACTGTTGGGTCCGGTG ACGGTGATGAAGGCCCCTCACCACGGCTCACGGACGTCCTCCACGGAAGCCCTGCTGGCACGCACACGCCCACGGCACGT CGTCTTCTGCGTGGGCCGGCGCAACCGGTACGGGTTCCCCCACGACGACGTGGAGGCGCGATACCGGGCGCTGGGAAGCG AGTGCTGGAGAACTGACCAGCATGGCGCCATCACCGTGGAAAGCGACGGCCAGGACGTCCGCCTGCTCACCTTCCTGCCC CACGAGCCCTCTCCCCGGGCCACACCGGTTGCGCGGGCTGGGGACCCATCACCAGATTGGGGCCGATGA
Upstream 100 bases:
>100_bases CTTGACCACCCAGGACGCTCCCGACTACGTTGTCGGTTTCTACACGCGGTGTCGGCAGATGTGTGCACCAGCGTGACGGG CGGCGGGTGGGGGTCGGAAG
Downstream 100 bases:
>100_bases TTCCAGAGGATATCGACCTCCAGCAGCTCACCGCCGACCTGAAGAACGCGCTCGGCCCGGGAGAACCCATCGGGTACCTC CGTGGCAAGTCCGTGATGCG
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MERHAWRDLGARPLFFPALSLSLGALCAPVTSAYAEPFLVCGLLLGALGLTLARLPSAHLAVLASLWAAGAGLARWESQV DVPAELTQGNTIVIEGETERVDRFDGTTRVRLAVARAGVSPGPLAPVRFRMNLSLRGDPPPLLPGQRVRAETKLQPDAPP SNPGEKDFGAARRRQGVAFTGGMDARRLMVLSPAPAWRVSLEDTRTRLAAAVHAVSPSTDAAALFLTLAAGQRAALDDSW EEAFSRAGLAHVLSVSGLHVAALALMTLAVLRRLVVRTGERWRMLDARQVAAPAAVPFVWAYVVFTDNQPPAVRSAVMAT VVLLGLALWRRADGLNGLAAAAVVLVAWAPSSVADLSLRLSFLAVLGLVLLSPPLRQALPLAEPDPSEPHRVRRWWGQAQ ETVAQTLCASAAATLSGLPIVAATFGRVSIAGLISNVVALPLCGLLTGLAAGGAALFVVAPVLATPVLWAGAWASELLLV ITRLFAAAPLASVEVPSLGFLSALYAAGLLTWALGTGRWRLGGLLAPAAVVAAILAPVLTPQPGLRVTFLYVGQGDGVVV SSGGEHMLVDGGGVPGGMDTAERFILPYLKHAGISQLDLAVLSHPHPDHALGLASALKQIPTQRLWMPAGDGDGPLSRQV VAAAGTALVEEVEVGHPPLRLGEATIEVLGPPALETRDLLEGANDRSVVLLVRHGDVTVLLTGDVEADGEESLAELLGPV TVMKAPHHGSRTSSTEALLARTRPRHVVFCVGRRNRYGFPHDDVEARYRALGSECWRTDQHGAITVESDGQDVRLLTFLP HEPSPRATPVARAGDPSPDWGR
Sequences:
>Translated_822_residues MERHAWRDLGARPLFFPALSLSLGALCAPVTSAYAEPFLVCGLLLGALGLTLARLPSAHLAVLASLWAAGAGLARWESQV DVPAELTQGNTIVIEGETERVDRFDGTTRVRLAVARAGVSPGPLAPVRFRMNLSLRGDPPPLLPGQRVRAETKLQPDAPP SNPGEKDFGAARRRQGVAFTGGMDARRLMVLSPAPAWRVSLEDTRTRLAAAVHAVSPSTDAAALFLTLAAGQRAALDDSW EEAFSRAGLAHVLSVSGLHVAALALMTLAVLRRLVVRTGERWRMLDARQVAAPAAVPFVWAYVVFTDNQPPAVRSAVMAT VVLLGLALWRRADGLNGLAAAAVVLVAWAPSSVADLSLRLSFLAVLGLVLLSPPLRQALPLAEPDPSEPHRVRRWWGQAQ ETVAQTLCASAAATLSGLPIVAATFGRVSIAGLISNVVALPLCGLLTGLAAGGAALFVVAPVLATPVLWAGAWASELLLV ITRLFAAAPLASVEVPSLGFLSALYAAGLLTWALGTGRWRLGGLLAPAAVVAAILAPVLTPQPGLRVTFLYVGQGDGVVV SSGGEHMLVDGGGVPGGMDTAERFILPYLKHAGISQLDLAVLSHPHPDHALGLASALKQIPTQRLWMPAGDGDGPLSRQV VAAAGTALVEEVEVGHPPLRLGEATIEVLGPPALETRDLLEGANDRSVVLLVRHGDVTVLLTGDVEADGEESLAELLGPV TVMKAPHHGSRTSSTEALLARTRPRHVVFCVGRRNRYGFPHDDVEARYRALGSECWRTDQHGAITVESDGQDVRLLTFLP HEPSPRATPVARAGDPSPDWGR >Mature_822_residues MERHAWRDLGARPLFFPALSLSLGALCAPVTSAYAEPFLVCGLLLGALGLTLARLPSAHLAVLASLWAAGAGLARWESQV DVPAELTQGNTIVIEGETERVDRFDGTTRVRLAVARAGVSPGPLAPVRFRMNLSLRGDPPPLLPGQRVRAETKLQPDAPP SNPGEKDFGAARRRQGVAFTGGMDARRLMVLSPAPAWRVSLEDTRTRLAAAVHAVSPSTDAAALFLTLAAGQRAALDDSW EEAFSRAGLAHVLSVSGLHVAALALMTLAVLRRLVVRTGERWRMLDARQVAAPAAVPFVWAYVVFTDNQPPAVRSAVMAT VVLLGLALWRRADGLNGLAAAAVVLVAWAPSSVADLSLRLSFLAVLGLVLLSPPLRQALPLAEPDPSEPHRVRRWWGQAQ ETVAQTLCASAAATLSGLPIVAATFGRVSIAGLISNVVALPLCGLLTGLAAGGAALFVVAPVLATPVLWAGAWASELLLV ITRLFAAAPLASVEVPSLGFLSALYAAGLLTWALGTGRWRLGGLLAPAAVVAAILAPVLTPQPGLRVTFLYVGQGDGVVV SSGGEHMLVDGGGVPGGMDTAERFILPYLKHAGISQLDLAVLSHPHPDHALGLASALKQIPTQRLWMPAGDGDGPLSRQV VAAAGTALVEEVEVGHPPLRLGEATIEVLGPPALETRDLLEGANDRSVVLLVRHGDVTVLLTGDVEADGEESLAELLGPV TVMKAPHHGSRTSSTEALLARTRPRHVVFCVGRRNRYGFPHDDVEARYRALGSECWRTDQHGAITVESDGQDVRLLTFLP HEPSPRATPVARAGDPSPDWGR
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=648, Percent_Identity=25.9259259259259, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 86419; Mature: 86419
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERHAWRDLGARPLFFPALSLSLGALCAPVTSAYAEPFLVCGLLLGALGLTLARLPSAHL CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AVLASLWAAGAGLARWESQVDVPAELTQGNTIVIEGETERVDRFDGTTRVRLAVARAGVS HHHHHHHHCCCCHHHHHCCCCCCCEECCCCEEEEECCHHHHHHCCCCCCEEEEEECCCCC PGPLAPVRFRMNLSLRGDPPPLLPGQRVRAETKLQPDAPPSNPGEKDFGAARRRQGVAFT CCCCCCEEEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEE GGMDARRLMVLSPAPAWRVSLEDTRTRLAAAVHAVSPSTDAAALFLTLAAGQRAALDDSW CCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHH EEAFSRAGLAHVLSVSGLHVAALALMTLAVLRRLVVRTGERWRMLDARQVAAPAAVPFVW HHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCHHHHEEE AYVVFTDNQPPAVRSAVMATVVLLGLALWRRADGLNGLAAAAVVLVAWAPSSVADLSLRL EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH SFLAVLGLVLLSPPLRQALPLAEPDPSEPHRVRRWWGQAQETVAQTLCASAAATLSGLPI HHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH VAATFGRVSIAGLISNVVALPLCGLLTGLAAGGAALFVVAPVLATPVLWAGAWASELLLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ITRLFAAAPLASVEVPSLGFLSALYAAGLLTWALGTGRWRLGGLLAPAAVVAAILAPVLT HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHCC PQPGLRVTFLYVGQGDGVVVSSGGEHMLVDGGGVPGGMDTAERFILPYLKHAGISQLDLA CCCCCEEEEEEEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHH VLSHPHPDHALGLASALKQIPTQRLWMPAGDGDGPLSRQVVAAAGTALVEEVEVGHPPLR HHCCCCCHHHHHHHHHHHHCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC LGEATIEVLGPPALETRDLLEGANDRSVVLLVRHGDVTVLLTGDVEADGEESLAELLGPV CCCHHHEECCCCCCCHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHCCC TVMKAPHHGSRTSSTEALLARTRPRHVVFCVGRRNRYGFPHDDVEARYRALGSECWRTDQ EEEECCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC HGAITVESDGQDVRLLTFLPHEPSPRATPVARAGDPSPDWGR CCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MERHAWRDLGARPLFFPALSLSLGALCAPVTSAYAEPFLVCGLLLGALGLTLARLPSAHL CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AVLASLWAAGAGLARWESQVDVPAELTQGNTIVIEGETERVDRFDGTTRVRLAVARAGVS HHHHHHHHCCCCHHHHHCCCCCCCEECCCCEEEEECCHHHHHHCCCCCCEEEEEECCCCC PGPLAPVRFRMNLSLRGDPPPLLPGQRVRAETKLQPDAPPSNPGEKDFGAARRRQGVAFT CCCCCCEEEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEE GGMDARRLMVLSPAPAWRVSLEDTRTRLAAAVHAVSPSTDAAALFLTLAAGQRAALDDSW CCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHH EEAFSRAGLAHVLSVSGLHVAALALMTLAVLRRLVVRTGERWRMLDARQVAAPAAVPFVW HHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCHHHHEEE AYVVFTDNQPPAVRSAVMATVVLLGLALWRRADGLNGLAAAAVVLVAWAPSSVADLSLRL EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH SFLAVLGLVLLSPPLRQALPLAEPDPSEPHRVRRWWGQAQETVAQTLCASAAATLSGLPI HHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH VAATFGRVSIAGLISNVVALPLCGLLTGLAAGGAALFVVAPVLATPVLWAGAWASELLLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ITRLFAAAPLASVEVPSLGFLSALYAAGLLTWALGTGRWRLGGLLAPAAVVAAILAPVLT HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHCC PQPGLRVTFLYVGQGDGVVVSSGGEHMLVDGGGVPGGMDTAERFILPYLKHAGISQLDLA CCCCCEEEEEEEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHH VLSHPHPDHALGLASALKQIPTQRLWMPAGDGDGPLSRQVVAAAGTALVEEVEVGHPPLR HHCCCCCHHHHHHHHHHHHCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC LGEATIEVLGPPALETRDLLEGANDRSVVLLVRHGDVTVLLTGDVEADGEESLAELLGPV CCCHHHEECCCCCCCHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHCCC TVMKAPHHGSRTSSTEALLARTRPRHVVFCVGRRNRYGFPHDDVEARYRALGSECWRTDQ EEEECCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC HGAITVESDGQDVRLLTFLPHEPSPRATPVARAGDPSPDWGR CCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]