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The map label for this gene is yqxC [H]

Identifier: 108757719

GI number: 108757719

Start: 5825171

End: 5825911

Strand: Reverse

Name: yqxC [H]

Synonym: MXAN_4642

Alternate gene names: 108757719

Gene position: 5825911-5825171 (Counterclockwise)

Preceding gene: 108761105

Following gene: 108763986

Centisome position: 63.74

GC content: 70.04

Gene sequence:

>741_bases
GTGAAGCCTCGCAAGGAGCGGTTGGACGTGCTGGTGGTGGAGCGCGGACTGGCCGAGTCGCGCACCAAGGCCCAGGCGCT
CATCCTGGCCGGCCAGGTGGTGGTGGGCGACCAGCGCGTGGACAAGCCCGGAACGCTGATTCCGCAGGAGGCGGAGCTGC
GCCTGAAGGGCGAGGTGCTTCCCTACGTGTCGCGCGGCGGCCTGAAACTGAAGGGCGCCATCGACCGCTTCGGGCTCGAC
GTTCGAGGCAAGGTGGCCGCGGACATCGGCGCGAGCACCGGCGGCTTCACGGATTGCCTGCTCCAGCACGGCGCCACGCG
CGTCCACGCGATTGACGTGGGCTACGGGCAGCTCCACGAGAAGCTGCGCACGGACCCGCGGGTGCGCTCGCGCGAGCGCG
TCAATGCGCGCTACCTCACGGAAGAAGACCTGCCGGAGACAGTCGGCGTGGTCGTCATCGACGTGAGCTTCATCTCCCTC
ACGCAGGTGCTGCCGTCGGTGCTGACGTACCTGGCGCCGGGCGGGCTCTTGGTCGCGCTGGTGAAGCCCCAGTTCGAGGT
GGGGCCGGACCGGGTAGGGAAGGGCGGCGTGGTGCGGGATGTCGCTGCCAGGCAGGACGCCATCGACACGGTGACGGCGT
TCGTCCGCGAGCAGGGCCTGGAGGTACTCGGGTTGATGGACTCCACGGTGCCCGGGCCCGCTGGCAACGTGGAGGCACTC
CTCGTCGCCAGCAGGCCCTGA

Upstream 100 bases:

>100_bases
TCGTTCCCCATGGGGACGCGCGGGTCCAGCGCGCGGAGCAGGGGCTGGACGCGGAGGGTCTGCGGCGCGCGGGCCTCGCG
CTGCTGGCAGGGGGCGGACG

Downstream 100 bases:

>100_bases
GTCGCGCGCGCTACGGCCGGTAGCGGCGGTAGTCGGACAGAGGCAGCGTCTGCACCACGTCGAAGCCAGTGCGGACCCAC
AGCCGGCCTTCCGGGTCGAT

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKPRKERLDVLVVERGLAESRTKAQALILAGQVVVGDQRVDKPGTLIPQEAELRLKGEVLPYVSRGGLKLKGAIDRFGLD
VRGKVAADIGASTGGFTDCLLQHGATRVHAIDVGYGQLHEKLRTDPRVRSRERVNARYLTEEDLPETVGVVVIDVSFISL
TQVLPSVLTYLAPGGLLVALVKPQFEVGPDRVGKGGVVRDVAARQDAIDTVTAFVREQGLEVLGLMDSTVPGPAGNVEAL
LVASRP

Sequences:

>Translated_246_residues
MKPRKERLDVLVVERGLAESRTKAQALILAGQVVVGDQRVDKPGTLIPQEAELRLKGEVLPYVSRGGLKLKGAIDRFGLD
VRGKVAADIGASTGGFTDCLLQHGATRVHAIDVGYGQLHEKLRTDPRVRSRERVNARYLTEEDLPETVGVVVIDVSFISL
TQVLPSVLTYLAPGGLLVALVKPQFEVGPDRVGKGGVVRDVAARQDAIDTVTAFVREQGLEVLGLMDSTVPGPAGNVEAL
LVASRP
>Mature_246_residues
MKPRKERLDVLVVERGLAESRTKAQALILAGQVVVGDQRVDKPGTLIPQEAELRLKGEVLPYVSRGGLKLKGAIDRFGLD
VRGKVAADIGASTGGFTDCLLQHGATRVHAIDVGYGQLHEKLRTDPRVRSRERVNARYLTEEDLPETVGVVVIDVSFISL
TQVLPSVLTYLAPGGLLVALVKPQFEVGPDRVGKGGVVRDVAARQDAIDTVTAFVREQGLEVLGLMDSTVPGPAGNVEAL
LVASRP

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26325; Mature: 26325

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRKERLDVLVVERGLAESRTKAQALILAGQVVVGDQRVDKPGTLIPQEAELRLKGEVL
CCCCHHHCCEEEEECCCHHHHHHHHEEEEECEEEECCCCCCCCCCCCCCCCCEEECCCCC
PYVSRGGLKLKGAIDRFGLDVRGKVAADIGASTGGFTDCLLQHGATRVHAIDVGYGQLHE
CEECCCCEEEECCHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHH
KLRTDPRVRSRERVNARYLTEEDLPETVGVVVIDVSFISLTQVLPSVLTYLAPGGLLVAL
HHCCCCCHHHHHHCCCEECCCCCCCHHHCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
VKPQFEVGPDRVGKGGVVRDVAARQDAIDTVTAFVREQGLEVLGLMDSTVPGPAGNVEAL
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEE
LVASRP
EEECCC
>Mature Secondary Structure
MKPRKERLDVLVVERGLAESRTKAQALILAGQVVVGDQRVDKPGTLIPQEAELRLKGEVL
CCCCHHHCCEEEEECCCHHHHHHHHEEEEECEEEECCCCCCCCCCCCCCCCCEEECCCCC
PYVSRGGLKLKGAIDRFGLDVRGKVAADIGASTGGFTDCLLQHGATRVHAIDVGYGQLHE
CEECCCCEEEECCHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCHHHHHH
KLRTDPRVRSRERVNARYLTEEDLPETVGVVVIDVSFISLTQVLPSVLTYLAPGGLLVAL
HHCCCCCHHHHHHCCCEECCCCCCCHHHCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
VKPQFEVGPDRVGKGGVVRDVAARQDAIDTVTAFVREQGLEVLGLMDSTVPGPAGNVEAL
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEE
LVASRP
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]