| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is 108757682
Identifier: 108757682
GI number: 108757682
Start: 2250052
End: 2251524
Strand: Reverse
Name: 108757682
Synonym: MXAN_1921
Alternate gene names: NA
Gene position: 2251524-2250052 (Counterclockwise)
Preceding gene: 108757885
Following gene: 108756982
Centisome position: 24.63
GC content: 72.57
Gene sequence:
>1473_bases GTGAGTCCTGGCCCGCGTCTTTCATGCGCCCGCGCGCTGACCTCCGTGGTGCTGGCCTCCAGCCTCTGGCTGTCCGCGTG CGCCACCACACCCGCCGCCCCTCGGCCAACGCCCGAGGAGACCGCCGAGGACGCGGACTCCACCGCCACGACACCGCCGG ACGCGGGCGCCACCACGGAGGCGCCGTCACCGCCCCTGTCCCGTCCGGAAGCGCCGCGCGGCCCCGAGCGCGACTTCGTC GAGGCGGTGGAGATTGCGCGCCGGGGAGAGCTGACCGCGGCCGAAGCGGCGCTGCGCACCCTGGTCGAGCTGGACCCGAA GCTGGACTACGCGTGGACGAACCTGGGCATCGTCCAGGAGCGGATGGGGAAGACCGCGGACGCGGAGCGCTCCTACCGCA AGGCACTGGACGTGGCCCCCGAACAGCAGTCCGCGTGGGACTGCCTGGCGCGCCTGTATGGCCGCACCGGCCGCACGGCG AAGCTGGAAGCCGAGCTGCGCGAGCGGCTGTCCTCCCAGCCGGACTCGGTCGCGCTGCGCACCGCGCTGGCCATCACCCT GCTCCAGGCGAAGAACCACGCCGCCGCCTCGGCCGAGGCCAAGCAGGCGCTGAAGGGCGACGAGCGGCACGTGCGCGCCA TGCAGGTGCTGGCGCAGGTCTACTACCGCGAGGGCAAGCACGAGCTGGCGCGCATGGTGCTGGAGAACGCCCGCGCCATC GACCCGAAAGACGCGGCCACGCACAACGGGCTGGGGCTGGTGTACCTGGCGCTCGACTCGCGTCCCCAGGCCCTGGAGTC CTTCAAGACGGCCGCGCAACTGCGGCCGGACTTCGCGGAGGCGCGCAACAACTTCGGCGCCATGCTCAACGAGGCGCAGG ACTACGCGGCCGCCGTCACCGAACTGGAGGCAGCGGTGCGCGCCGCGCCGGACTTCGCGTCGGCCCGCCTCAACCTGGGC AACGCCCACCGGGGCCAGGGGAACTTCGCGCGGGCCCGCGCCGAGTACGAGCAGGTGCTGCTGCTGATGCCGCGCGCCGC GGATGCGTACTTCAACCTGGCCATCCTCTACCTCGACGTGGAGCCGCCGGGCATGGAGCCGCTGAAGCGCTACAAGACGG CCCTCACCCACTTCGACAACTACCAGGCGCGCGGCGGACGCGACGAACGCATCGCCCAGTACATGAAGGACGCGCGCAAG CTCATCGACCGCGAGGAGCGGCGACTGGAGCGCGAGCAGAAGGACCAGCTCCGAAAGGCCACCGAGGCGCAGAAAGCCGC CGAGGCCAGCCCCCCCGAGGGAACACCGCCCGCCCCTTCGGTGTCCAACCCGGAGCCGGGCACGCGCGTCGCGGCGCCTG ACGCCTCACCTTCCACCACCTCCGCCCCAAGCAGCCCGGCACCGTCACCGGACGGCGCGTCCGCTGCCCCGGTGCCCACC GGCTCGGGTAGACTCACCGCCGACTCACAGTAA
Upstream 100 bases:
>100_bases CCGCGGACGCCACCTACCCGGATGGGCTGGTGGGCAGCATCACCGGCCCCGTGCGCTCGACGCAGCAAGAGGGCCCGCGC CTGTCCGGGGAGGGAGCGAA
Downstream 100 bases:
>100_bases ATCCGCCATGCGCTCCGCCTTCGCCCTCATCGTGCTGCTCGCCGCCGCGCCCGTCCTGGCCCAGGACGCCAGTCAGGCCT CCTCGTCCAGCAGCGGCGCC
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Family; Tetratricopeptide TPR_1 Repeat-Containing Protein; TPR Repeat Protein; Adventurous Gliding Protein T; Tetratricopeptide Repeat-Containing Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family Protein; TPR Domain Protein; Methyltransferase Type; Peptidase S1 And S6 Chymotrypsin/Hap; Adventurous Gliding Motility Protein AglT; Tetratricopeptide Repeat Protein; Peptidase; Adventurous Gliding Motility Protein T
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MSPGPRLSCARALTSVVLASSLWLSACATTPAAPRPTPEETAEDADSTATTPPDAGATTEAPSPPLSRPEAPRGPERDFV EAVEIARRGELTAAEAALRTLVELDPKLDYAWTNLGIVQERMGKTADAERSYRKALDVAPEQQSAWDCLARLYGRTGRTA KLEAELRERLSSQPDSVALRTALAITLLQAKNHAAASAEAKQALKGDERHVRAMQVLAQVYYREGKHELARMVLENARAI DPKDAATHNGLGLVYLALDSRPQALESFKTAAQLRPDFAEARNNFGAMLNEAQDYAAAVTELEAAVRAAPDFASARLNLG NAHRGQGNFARARAEYEQVLLLMPRAADAYFNLAILYLDVEPPGMEPLKRYKTALTHFDNYQARGGRDERIAQYMKDARK LIDREERRLEREQKDQLRKATEAQKAAEASPPEGTPPAPSVSNPEPGTRVAAPDASPSTTSAPSSPAPSPDGASAAPVPT GSGRLTADSQ
Sequences:
>Translated_490_residues MSPGPRLSCARALTSVVLASSLWLSACATTPAAPRPTPEETAEDADSTATTPPDAGATTEAPSPPLSRPEAPRGPERDFV EAVEIARRGELTAAEAALRTLVELDPKLDYAWTNLGIVQERMGKTADAERSYRKALDVAPEQQSAWDCLARLYGRTGRTA KLEAELRERLSSQPDSVALRTALAITLLQAKNHAAASAEAKQALKGDERHVRAMQVLAQVYYREGKHELARMVLENARAI DPKDAATHNGLGLVYLALDSRPQALESFKTAAQLRPDFAEARNNFGAMLNEAQDYAAAVTELEAAVRAAPDFASARLNLG NAHRGQGNFARARAEYEQVLLLMPRAADAYFNLAILYLDVEPPGMEPLKRYKTALTHFDNYQARGGRDERIAQYMKDARK LIDREERRLEREQKDQLRKATEAQKAAEASPPEGTPPAPSVSNPEPGTRVAAPDASPSTTSAPSSPAPSPDGASAAPVPT GSGRLTADSQ >Mature_489_residues SPGPRLSCARALTSVVLASSLWLSACATTPAAPRPTPEETAEDADSTATTPPDAGATTEAPSPPLSRPEAPRGPERDFVE AVEIARRGELTAAEAALRTLVELDPKLDYAWTNLGIVQERMGKTADAERSYRKALDVAPEQQSAWDCLARLYGRTGRTAK LEAELRERLSSQPDSVALRTALAITLLQAKNHAAASAEAKQALKGDERHVRAMQVLAQVYYREGKHELARMVLENARAID PKDAATHNGLGLVYLALDSRPQALESFKTAAQLRPDFAEARNNFGAMLNEAQDYAAAVTELEAAVRAAPDFASARLNLGN AHRGQGNFARARAEYEQVLLLMPRAADAYFNLAILYLDVEPPGMEPLKRYKTALTHFDNYQARGGRDERIAQYMKDARKL IDREERRLEREQKDQLRKATEAQKAAEASPPEGTPPAPSVSNPEPGTRVAAPDASPSTTSAPSSPAPSPDGASAAPVPTG SGRLTADSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307150, Length=267, Percent_Identity=30.3370786516854, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI32307148, Length=267, Percent_Identity=30.3370786516854, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI118766330, Length=201, Percent_Identity=27.8606965174129, Blast_Score=66, Evalue=8e-11, Organism=Caenorhabditis elegans, GI115532690, Length=267, Percent_Identity=29.2134831460674, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI115532692, Length=267, Percent_Identity=29.2134831460674, Blast_Score=85, Evalue=9e-17, Organism=Drosophila melanogaster, GI17647755, Length=267, Percent_Identity=29.5880149812734, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24585827, Length=267, Percent_Identity=29.5880149812734, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24585829, Length=267, Percent_Identity=29.5880149812734, Blast_Score=90, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52801; Mature: 52670
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPGPRLSCARALTSVVLASSLWLSACATTPAAPRPTPEETAEDADSTATTPPDAGATTE CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC APSPPLSRPEAPRGPERDFVEAVEIARRGELTAAEAALRTLVELDPKLDYAWTNLGIVQE CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH RMGKTADAERSYRKALDVAPEQQSAWDCLARLYGRTGRTAKLEAELRERLSSQPDSVALR HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCHHHHH TALAITLLQAKNHAAASAEAKQALKGDERHVRAMQVLAQVYYREGKHELARMVLENARAI HHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC DPKDAATHNGLGLVYLALDSRPQALESFKTAAQLRPDFAEARNNFGAMLNEAQDYAAAVT CCCHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH ELEAAVRAAPDFASARLNLGNAHRGQGNFARARAEYEQVLLLMPRAADAYFNLAILYLDV HHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCEEEEEEEEEEC EPPGMEPLKRYKTALTHFDNYQARGGRDERIAQYMKDARKLIDREERRLEREQKDQLRKA CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TEAQKAAEASPPEGTPPAPSVSNPEPGTRVAAPDASPSTTSAPSSPAPSPDGASAAPVPT HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSGRLTADSQ CCCCCCCCCC >Mature Secondary Structure SPGPRLSCARALTSVVLASSLWLSACATTPAAPRPTPEETAEDADSTATTPPDAGATTE CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC APSPPLSRPEAPRGPERDFVEAVEIARRGELTAAEAALRTLVELDPKLDYAWTNLGIVQE CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH RMGKTADAERSYRKALDVAPEQQSAWDCLARLYGRTGRTAKLEAELRERLSSQPDSVALR HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCHHHHH TALAITLLQAKNHAAASAEAKQALKGDERHVRAMQVLAQVYYREGKHELARMVLENARAI HHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC DPKDAATHNGLGLVYLALDSRPQALESFKTAAQLRPDFAEARNNFGAMLNEAQDYAAAVT CCCHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH ELEAAVRAAPDFASARLNLGNAHRGQGNFARARAEYEQVLLLMPRAADAYFNLAILYLDV HHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCEEEEEEEEEEC EPPGMEPLKRYKTALTHFDNYQARGGRDERIAQYMKDARKLIDREERRLEREQKDQLRKA CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TEAQKAAEASPPEGTPPAPSVSNPEPGTRVAAPDASPSTTSAPSSPAPSPDGASAAPVPT HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC GSGRLTADSQ CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA