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The map label for this gene is cph2 [H]

Identifier: 108757569

GI number: 108757569

Start: 3085591

End: 3086685

Strand: Direct

Name: cph2 [H]

Synonym: MXAN_2643

Alternate gene names: 108757569

Gene position: 3085591-3086685 (Clockwise)

Preceding gene: 108759968

Following gene: 108758372

Centisome position: 33.76

GC content: 68.13

Gene sequence:

>1095_bases
ATGAATCCCGCGGACCTCCTGTCGGCCATGAAGCGGACAGTGGAGCAGTTGGCCGCCTTCAATGAGATGGCGAAGGCCCT
GACGTCCACGCTCGAGCTCCGCGAGGTGCTGGCGCTGGTGATGCAGAAGGTCAGCAGCCTGCTGCTGCCTCGCAACTGGT
CGCTCATCCTCCAGGACGAGCGCACCGGAAAGCTCTACTTCGAAATCGCGGTGGGTGACGGCGCGGACGTGCTCAAGGGC
CTCCAGCTCAACCCGGGCGAGGGCATTGCCGGCGCCGTCTTCACGTCCGGCGCGGCGCGGCTCGTCCATGACGTGGGTGG
GGACCCCAGCTTCTCGCCACGCTTCGATGAAGCCTCCGCCTTCCACACCCGCTCCATCCTCGCGGTGCCGCTGCTGGCCC
GGGGCCGGGTCCTGGGCATCATCGAACTGGTGAACGGGCCCATGGACCCCCCCTTCACCAACGAGGACCTCACCATTCTC
ACCGCCATCGCGGACTACGCGGCCATCGCGATTGAGAACGCGCGCAACTTCCGGCGGGTGCAGGAGTTGACGATTACGGA
CGAGCACACCGGCTGCTACAACGCCCGGCACCTGCGCGCCTTGCTGGACCAGGAGGTGAAGCGCTCGGAGCGCTTCAGCC
ACCCGCTGTCGCTCGTCTTCCTGGACCTGGACCACTTCAAGAGCATCAACGACACCCATGGGCACCTGGTGGGTAGCGCC
ACCTTGAAGGAAGTGGGGGACCTGCTGATGACCCTGGGCCGGCAGAACCTGGACGCCGTCTTCCGCTACGGCGGCGACGA
GTTCGCCATGTTGCTGGTGGAGACGGACCCGGAGGGCGCGGCCGTCATCGGCCAGCGCGTCTGCGAGGCCTTTCGGGGGC
GGGGCTTCCTCCTGGAGCAGGGCCTGGACGTGCGCCTCACCGCCAGCGTGGGCGTGGCCACCTACCCGGACCATGCCTCG
TCCGCGCTGGACCTCATCCGCGCGGCGGACTTCGCCATGTACGCGGCCAAGGCCCGGGGCCGGGACGCGCTCTGCATCGC
CGAGCCCATTGCTCCGAACGGCGGCACAGGCTCCCACGAGTTCCCGGAGCGGTAG

Upstream 100 bases:

>100_bases
GACGCCGAGGCCAGGACGAGCAACGTTTGATCTGCGTTCATGTGCATGTTACGGCTCGGCCCGGCCTTACCAGACTTGTG
CCCCGGAGTGGACTCTACGG

Downstream 100 bases:

>100_bases
CTGGCGCTTCGGCGCTGTTGGCCGCGAAGCCCGCAATGAGAGAGGGCCGGGGAGGGGAGTACCCTCGGCCCGGCCCTCGG
GGGCGTCACGGTTGGACGCC

Product: GAF/GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MNPADLLSAMKRTVEQLAAFNEMAKALTSTLELREVLALVMQKVSSLLLPRNWSLILQDERTGKLYFEIAVGDGADVLKG
LQLNPGEGIAGAVFTSGAARLVHDVGGDPSFSPRFDEASAFHTRSILAVPLLARGRVLGIIELVNGPMDPPFTNEDLTIL
TAIADYAAIAIENARNFRRVQELTITDEHTGCYNARHLRALLDQEVKRSERFSHPLSLVFLDLDHFKSINDTHGHLVGSA
TLKEVGDLLMTLGRQNLDAVFRYGGDEFAMLLVETDPEGAAVIGQRVCEAFRGRGFLLEQGLDVRLTASVGVATYPDHAS
SALDLIRAADFAMYAAKARGRDALCIAEPIAPNGGTGSHEFPER

Sequences:

>Translated_364_residues
MNPADLLSAMKRTVEQLAAFNEMAKALTSTLELREVLALVMQKVSSLLLPRNWSLILQDERTGKLYFEIAVGDGADVLKG
LQLNPGEGIAGAVFTSGAARLVHDVGGDPSFSPRFDEASAFHTRSILAVPLLARGRVLGIIELVNGPMDPPFTNEDLTIL
TAIADYAAIAIENARNFRRVQELTITDEHTGCYNARHLRALLDQEVKRSERFSHPLSLVFLDLDHFKSINDTHGHLVGSA
TLKEVGDLLMTLGRQNLDAVFRYGGDEFAMLLVETDPEGAAVIGQRVCEAFRGRGFLLEQGLDVRLTASVGVATYPDHAS
SALDLIRAADFAMYAAKARGRDALCIAEPIAPNGGTGSHEFPER
>Mature_364_residues
MNPADLLSAMKRTVEQLAAFNEMAKALTSTLELREVLALVMQKVSSLLLPRNWSLILQDERTGKLYFEIAVGDGADVLKG
LQLNPGEGIAGAVFTSGAARLVHDVGGDPSFSPRFDEASAFHTRSILAVPLLARGRVLGIIELVNGPMDPPFTNEDLTIL
TAIADYAAIAIENARNFRRVQELTITDEHTGCYNARHLRALLDQEVKRSERFSHPLSLVFLDLDHFKSINDTHGHLVGSA
TLKEVGDLLMTLGRQNLDAVFRYGGDEFAMLLVETDPEGAAVIGQRVCEAFRGRGFLLEQGLDVRLTASVGVATYPDHAS
SALDLIRAADFAMYAAKARGRDALCIAEPIAPNGGTGSHEFPER

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=37.3563218390805, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788381, Length=154, Percent_Identity=36.3636363636364, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=35.9550561797753, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI145693134, Length=153, Percent_Identity=35.2941176470588, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=148, Percent_Identity=33.7837837837838, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=137, Percent_Identity=32.8467153284672, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=31.9526627218935, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=132, Percent_Identity=38.6363636363636, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87082007, Length=137, Percent_Identity=30.6569343065693, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081881, Length=161, Percent_Identity=31.055900621118, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081974, Length=120, Percent_Identity=32.5, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193202333, Length=155, Percent_Identity=27.0967741935484, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39507; Mature: 39507

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00589 PTS_HPR_SER ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPADLLSAMKRTVEQLAAFNEMAKALTSTLELREVLALVMQKVSSLLLPRNWSLILQDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
RTGKLYFEIAVGDGADVLKGLQLNPGEGIAGAVFTSGAARLVHDVGGDPSFSPRFDEASA
CCCEEEEEEEECCCHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCHH
FHTRSILAVPLLARGRVLGIIELVNGPMDPPFTNEDLTILTAIADYAAIAIENARNFRRV
HHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QELTITDEHTGCYNARHLRALLDQEVKRSERFSHPLSLVFLDLDHFKSINDTHGHLVGSA
HHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCCCCCCEECHH
TLKEVGDLLMTLGRQNLDAVFRYGGDEFAMLLVETDPEGAAVIGQRVCEAFRGRGFLLEQ
HHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEC
GLDVRLTASVGVATYPDHASSALDLIRAADFAMYAAKARGRDALCIAEPIAPNGGTGSHE
CCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
FPER
CCCC
>Mature Secondary Structure
MNPADLLSAMKRTVEQLAAFNEMAKALTSTLELREVLALVMQKVSSLLLPRNWSLILQDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
RTGKLYFEIAVGDGADVLKGLQLNPGEGIAGAVFTSGAARLVHDVGGDPSFSPRFDEASA
CCCEEEEEEEECCCHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCHH
FHTRSILAVPLLARGRVLGIIELVNGPMDPPFTNEDLTILTAIADYAAIAIENARNFRRV
HHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QELTITDEHTGCYNARHLRALLDQEVKRSERFSHPLSLVFLDLDHFKSINDTHGHLVGSA
HHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCCCCCCEECHH
TLKEVGDLLMTLGRQNLDAVFRYGGDEFAMLLVETDPEGAAVIGQRVCEAFRGRGFLLEQ
HHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEC
GLDVRLTASVGVATYPDHASSALDLIRAADFAMYAAKARGRDALCIAEPIAPNGGTGSHE
CCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
FPER
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]