| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is serB [H]
Identifier: 108757505
GI number: 108757505
Start: 1270126
End: 1271325
Strand: Direct
Name: serB [H]
Synonym: MXAN_1089
Alternate gene names: 108757505
Gene position: 1270126-1271325 (Clockwise)
Preceding gene: 108758493
Following gene: 108761677
Centisome position: 13.9
GC content: 71.17
Gene sequence:
>1200_bases ATGACTCCGCCCCTGTCCGAAAGCGTGCTCATCACCGTCACCGGGAAGGACCATCCCGGAATCGTCTCGCGCCTCACCGG CCTGCTGGCGGAAGCTGGCGCCGAGCTGCTCGACGTGGAGCAGGTGGTGGTGCAGGGGCGCCTCACGCTCTGCCTGTTGG TGCGTCTGCCCCCGGCGAGCGGCACCCTGGAGACGCTGTTGTCCGCCGCGAAGACGCTGGGCGTGGCGCTGGACTTCCAG GTGGTGGAGGCGCCCGCCACGCCCGCCGCGTCCGCGCACCACGTCGTCACCGCCGTGGGCCGCGCCCTGGGCGCGAGGGA GCTTCATGCGCTGACGCAGGTGCTCGCGGGGCACGGTGCCAACGTGGAGCGAATCACGCGCCTCAGCGAGCCGCACCTGG GCTCGGTGGACATCCACATCAGCCTGCCGCCGGGCCAGCCGCCCGACGCGCTCAAGCACGCGCTGCTGGAGCTGTCCATG CAGTCGGGCGGGTTCGACGTGGCGCTGCAGCGCGAGAGCCTGTTCCGGCGCGGCAAGCGGATGGTCGTCATGGACATGGA CTCCACGCTCATCCGCATCGAGGTCATCGACGAGCTGGCGCGCGCGCATGGCGTGGGCGAGCAGGTGTCGCGCATCACCG AGCGCGCCATGCACGGCGAGATGGACTACGACGAATCGCTGCGTCAGCGCGTGGCGTTGCTGCAGGGCCTGGACGCGTCC GTGGTCCACCAGCTCGCGGCGAACCTGCCGCTGACGGAGGGCGCGGAGACGCTGGTGCGCGTGCTCAAGCGGCTGGGCTA CCGCACCGCCGTCATCAGCGGCGGCTTCTCCGTGGCGGCCGAGGCGCTGAAGGCGCGGCTGGGCATCGACTTCGCGTACT CCAACGAGTTGGAGATTCAGGACGGGAAGCTCACCGGCCGCACCGTGGGCCGCATCGTCAACGCGCAGCGCAAGGCGGAG CTGTTGGAGTCGCTGGCGCAGGCGGAAGGCATCCTGCTGGACCAGGTGGTCGCCGTGGGAGACGGTGCCAACGACTTGCT GATGCTGGAGCGTGCCGGGCTGGGCATCGCCTTCCGGGCGAAGCCCAAGCTGCGCGCCGCGGCCGACACGTCCATCGCCG CGGGCGGCCTGGACAGCATCCTCTACCTGCTGGGGCTCACCGGCCGCGAGCTTCTGGAAGCGGGCTCGGGCGCCGGCTGA
Upstream 100 bases:
>100_bases ATCTCCTCGGACACGCCGAAGGAGTGACGGACGAGCGGCCGGGCCCCGGCGCACTCGGGGCTCGCCGCGCACGTTGGGGG CTGCCACACTCCGTGGCGCC
Downstream 100 bases:
>100_bases GGGCGCGCCCTACAGCCGCATCCGCGCCGCCAGTTCGCGCTGCTGGAGCTGGTTCTTCTCCAGCAGCAGCTCGAGCAGCG CGCGCAGAATCTTGGAGCTC
Product: ACT domain-containing protein/phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MTPPLSESVLITVTGKDHPGIVSRLTGLLAEAGAELLDVEQVVVQGRLTLCLLVRLPPASGTLETLLSAAKTLGVALDFQ VVEAPATPAASAHHVVTAVGRALGARELHALTQVLAGHGANVERITRLSEPHLGSVDIHISLPPGQPPDALKHALLELSM QSGGFDVALQRESLFRRGKRMVVMDMDSTLIRIEVIDELARAHGVGEQVSRITERAMHGEMDYDESLRQRVALLQGLDAS VVHQLAANLPLTEGAETLVRVLKRLGYRTAVISGGFSVAAEALKARLGIDFAYSNELEIQDGKLTGRTVGRIVNAQRKAE LLESLAQAEGILLDQVVAVGDGANDLLMLERAGLGIAFRAKPKLRAAADTSIAAGGLDSILYLLGLTGRELLEAGSGAG
Sequences:
>Translated_399_residues MTPPLSESVLITVTGKDHPGIVSRLTGLLAEAGAELLDVEQVVVQGRLTLCLLVRLPPASGTLETLLSAAKTLGVALDFQ VVEAPATPAASAHHVVTAVGRALGARELHALTQVLAGHGANVERITRLSEPHLGSVDIHISLPPGQPPDALKHALLELSM QSGGFDVALQRESLFRRGKRMVVMDMDSTLIRIEVIDELARAHGVGEQVSRITERAMHGEMDYDESLRQRVALLQGLDAS VVHQLAANLPLTEGAETLVRVLKRLGYRTAVISGGFSVAAEALKARLGIDFAYSNELEIQDGKLTGRTVGRIVNAQRKAE LLESLAQAEGILLDQVVAVGDGANDLLMLERAGLGIAFRAKPKLRAAADTSIAAGGLDSILYLLGLTGRELLEAGSGAG >Mature_398_residues TPPLSESVLITVTGKDHPGIVSRLTGLLAEAGAELLDVEQVVVQGRLTLCLLVRLPPASGTLETLLSAAKTLGVALDFQV VEAPATPAASAHHVVTAVGRALGARELHALTQVLAGHGANVERITRLSEPHLGSVDIHISLPPGQPPDALKHALLELSMQ SGGFDVALQRESLFRRGKRMVVMDMDSTLIRIEVIDELARAHGVGEQVSRITERAMHGEMDYDESLRQRVALLQGLDASV VHQLAANLPLTEGAETLVRVLKRLGYRTAVISGGFSVAAEALKARLGIDFAYSNELEIQDGKLTGRTVGRIVNAQRKAEL LESLAQAEGILLDQVVAVGDGANDLLMLERAGLGIAFRAKPKLRAAADTSIAAGGLDSILYLLGLTGRELLEAGSGAG
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=182, Percent_Identity=32.4175824175824, Blast_Score=73, Evalue=5e-13, Organism=Escherichia coli, GI1790849, Length=208, Percent_Identity=50.4807692307692, Blast_Score=199, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6321647, Length=259, Percent_Identity=40.9266409266409, Blast_Score=187, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 42080; Mature: 41949
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPLSESVLITVTGKDHPGIVSRLTGLLAEAGAELLDVEQVVVQGRLTLCLLVRLPPAS CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEEEECCCCC GTLETLLSAAKTLGVALDFQVVEAPATPAASAHHVVTAVGRALGARELHALTQVLAGHGA CHHHHHHHHHHHHCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NVERITRLSEPHLGSVDIHISLPPGQPPDALKHALLELSMQSGGFDVALQRESLFRRGKR CHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCE MVVMDMDSTLIRIEVIDELARAHGVGEQVSRITERAMHGEMDYDESLRQRVALLQGLDAS EEEEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH VVHQLAANLPLTEGAETLVRVLKRLGYRTAVISGGFSVAAEALKARLGIDFAYSNELEIQ HHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCEEEECCCEEEE DGKLTGRTVGRIVNAQRKAELLESLAQAEGILLDQVVAVGDGANDLLMLERAGLGIAFRA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEC KPKLRAAADTSIAAGGLDSILYLLGLTGRELLEAGSGAG CCCCHHHCCCCHHCCCHHHHHHHHCCCHHHHHHCCCCCC >Mature Secondary Structure TPPLSESVLITVTGKDHPGIVSRLTGLLAEAGAELLDVEQVVVQGRLTLCLLVRLPPAS CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEEEECCCCC GTLETLLSAAKTLGVALDFQVVEAPATPAASAHHVVTAVGRALGARELHALTQVLAGHGA CHHHHHHHHHHHHCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NVERITRLSEPHLGSVDIHISLPPGQPPDALKHALLELSMQSGGFDVALQRESLFRRGKR CHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCE MVVMDMDSTLIRIEVIDELARAHGVGEQVSRITERAMHGEMDYDESLRQRVALLQGLDAS EEEEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH VVHQLAANLPLTEGAETLVRVLKRLGYRTAVISGGFSVAAEALKARLGIDFAYSNELEIQ HHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCEEEECCCEEEE DGKLTGRTVGRIVNAQRKAELLESLAQAEGILLDQVVAVGDGANDLLMLERAGLGIAFRA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEC KPKLRAAADTSIAAGGLDSILYLLGLTGRELLEAGSGAG CCCCHHHCCCCHHCCCHHHHHHHHCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA