BacMap

Definition	Myxococcus xanthus DK 1622 chromosome, complete genome.
Accession	NC_008095
Length	9,139,763

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The map label for this gene is yxnA [H]

Identifier: 108757292

GI number: 108757292

Start: 5162453

End: 5163214

Strand: Reverse

Name: yxnA [H]

Synonym: MXAN_4206

Alternate gene names: 108757292

Gene position: 5163214-5162453 (Counterclockwise)

Preceding gene: 108759531

Following gene: 108762803

Centisome position: 56.49

GC content: 69.29

Gene sequence:

>762_bases
ATGGACATGGACAAGGTCATCGTCATCACTGGAGCAAGCAGCGGCATTGGCGCGGAGCTGGCGCGGCAAGCGGCCGCGAA
GGGCGCCCGGCTGGTGCTGGCCGCGCGCCGCAAGGCGGAGCTGAAAGTGGTGGCCGGCCAGTGTGGGCACGAGGCACTCG
CCGTGGTCACGGACGCGACCCGGCGCGCGGACATGGAGCGGCTCCGTGACGCCGCGCTCGCCCGATTTGGCCGCATCGAC
GTGTGGGTGAACAACGCGGGGCGAGGCATCACGCGCTCCGTGGCGGAGCTCACGGACGAGGACCTGGAGACCATGTGGCG
CGACAACGTGAACAGCGCCTTGTACGGGATGCAGGCGGTGTTGCCGCACTTCCAGTCGCGCGACGCCGGGCAGTTGGTGA
ATGTCTCCAGCACCCTGGGGCGGCTGCCCATCGTTCCCCACCGTTCGGCGTACAGCGCGGCGAAGCATGCGCTCAACGCG
CTCAGCGCCTGCCTGCGCCAGGAGCTGCGTGAGACGTACCCGGGCATCACCGTGACGGTGGTGATGCCCGGCGTGGTCGC
AACGGCATTCGGGGACAACGCGCTTGGCGGAGGGCCCGATTCGCGGGGGCTGCCAGGGGCTCAGCGCGTCGAGGATGCCG
CGACAGTCATCCTCGATTCCATCGAACGTCCGCGTGCCGAGGTCTACACCCAGGCGGCGACCCAGGCACAGGTGGAGCGG
TACTACCAGGATGTGGAGGCCTTCGAGCGGGGAGGCACCTGA

Upstream 100 bases:

>100_bases
CCTGGCGCCGGGGATGCGAAGCGCCCTCCACCGGGGGGCTGCCGGGCTCGCGGGGCGTCAGGGCGCCTGATAGAGGCACA
CGCGTCAGCCTGGGAGGACC

Downstream 100 bases:

>100_bases
CGCATCTGAGCCGTCCCCGCGGCGACGTCAGAGCACCCAGGCGCGCCGGGTGTTCACGTCGCTCTTGAAGCGGTGGTAGG
GGTTGCCGGAGTCCTGCACG

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MDMDKVIVITGASSGIGAELARQAAAKGARLVLAARRKAELKVVAGQCGHEALAVVTDATRRADMERLRDAALARFGRID
VWVNNAGRGITRSVAELTDEDLETMWRDNVNSALYGMQAVLPHFQSRDAGQLVNVSSTLGRLPIVPHRSAYSAAKHALNA
LSACLRQELRETYPGITVTVVMPGVVATAFGDNALGGGPDSRGLPGAQRVEDAATVILDSIERPRAEVYTQAATQAQVER
YYQDVEAFERGGT

Sequences:

>Translated_253_residues
MDMDKVIVITGASSGIGAELARQAAAKGARLVLAARRKAELKVVAGQCGHEALAVVTDATRRADMERLRDAALARFGRID
VWVNNAGRGITRSVAELTDEDLETMWRDNVNSALYGMQAVLPHFQSRDAGQLVNVSSTLGRLPIVPHRSAYSAAKHALNA
LSACLRQELRETYPGITVTVVMPGVVATAFGDNALGGGPDSRGLPGAQRVEDAATVILDSIERPRAEVYTQAATQAQVER
YYQDVEAFERGGT
>Mature_253_residues
MDMDKVIVITGASSGIGAELARQAAAKGARLVLAARRKAELKVVAGQCGHEALAVVTDATRRADMERLRDAALARFGRID
VWVNNAGRGITRSVAELTDEDLETMWRDNVNSALYGMQAVLPHFQSRDAGQLVNVSSTLGRLPIVPHRSAYSAAKHALNA
LSACLRQELRETYPGITVTVVMPGVVATAFGDNALGGGPDSRGLPGAQRVEDAATVILDSIERPRAEVYTQAATQAQVER
YYQDVEAFERGGT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=202, Percent_Identity=39.6039603960396, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=34.3283582089552, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI109715829, Length=197, Percent_Identity=30.9644670050761, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI157739938, Length=196, Percent_Identity=30.1020408163265, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=29.5336787564767, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7705855, Length=189, Percent_Identity=30.6878306878307, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI40254992, Length=186, Percent_Identity=31.7204301075269, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=30.8900523560209, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI210032110, Length=205, Percent_Identity=27.8048780487805, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI150247226, Length=197, Percent_Identity=31.9796954314721, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI7657478, Length=197, Percent_Identity=31.4720812182741, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI19743808, Length=188, Percent_Identity=30.8510638297872, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI4503817, Length=185, Percent_Identity=28.1081081081081, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40807363, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40548397, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI214010158, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI214010156, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI22758144, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4557649, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40254986, Length=175, Percent_Identity=25.1428571428571, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=29.8429319371728, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI38348362, Length=209, Percent_Identity=29.1866028708134, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI38424085, Length=183, Percent_Identity=30.0546448087432, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=198, Percent_Identity=29.2929292929293, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=32.9842931937173, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787335, Length=186, Percent_Identity=30.1075268817204, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789208, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788459, Length=197, Percent_Identity=30.9644670050761, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI2367365, Length=188, Percent_Identity=31.9148936170213, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787526, Length=199, Percent_Identity=29.6482412060301, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787905, Length=136, Percent_Identity=31.6176470588235, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790717, Length=190, Percent_Identity=30.5263157894737, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=208, Percent_Identity=34.6153846153846, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=212, Percent_Identity=35.8490566037736, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=36.1809045226131, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=208, Percent_Identity=29.8076923076923, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71997402, Length=199, Percent_Identity=34.1708542713568, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=203, Percent_Identity=31.5270935960591, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17570069, Length=195, Percent_Identity=32.3076923076923, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=206, Percent_Identity=33.9805825242718, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=189, Percent_Identity=34.3915343915344, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=32.4742268041237, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=31.2820512820513, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=203, Percent_Identity=30.5418719211823, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=33.1578947368421, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=203, Percent_Identity=32.512315270936, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=191, Percent_Identity=29.3193717277487, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=28.7234042553192, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=194, Percent_Identity=28.8659793814433, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=29.2929292929293, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=204, Percent_Identity=31.8627450980392, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=207, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=226, Percent_Identity=26.5486725663717, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=226, Percent_Identity=26.5486725663717, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=208, Percent_Identity=29.3269230769231, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=268, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=197, Percent_Identity=29.9492385786802, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=214, Percent_Identity=28.5046728971963, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=34.3589743589744, Blast_Score=96, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6322861, Length=180, Percent_Identity=28.8888888888889, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=38.0952380952381, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI21358495, Length=207, Percent_Identity=33.8164251207729, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI23397609, Length=186, Percent_Identity=37.6344086021505, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=33.8235294117647, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=35.978835978836, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=34.5744680851064, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI116007236, Length=230, Percent_Identity=28.2608695652174, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24643142, Length=190, Percent_Identity=33.6842105263158, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24640492, Length=198, Percent_Identity=29.7979797979798, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281364892, Length=242, Percent_Identity=28.099173553719, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=27.9569892473118, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648944, Length=206, Percent_Identity=32.5242718446602, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=31.9371727748691, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641232, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584744, Length=203, Percent_Identity=32.512315270936, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574402, Length=203, Percent_Identity=32.512315270936, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571387, Length=195, Percent_Identity=31.2820512820513, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161076933, Length=203, Percent_Identity=29.5566502463054, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24584748, Length=203, Percent_Identity=29.5566502463054, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=26.7441860465116, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=30.8457711442786, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27071; Mature: 27071

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMDKVIVITGASSGIGAELARQAAAKGARLVLAARRKAELKVVAGQCGHEALAVVTDAT
CCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHCCCCEEEEECCCCCHHHHHHHHHH
RRADMERLRDAALARFGRIDVWVNNAGRGITRSVAELTDEDLETMWRDNVNSALYGMQAV
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LPHFQSRDAGQLVNVSSTLGRLPIVPHRSAYSAAKHALNALSACLRQELRETYPGITVTV
HHHHCCCCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VMPGVVATAFGDNALGGGPDSRGLPGAQRVEDAATVILDSIERPRAEVYTQAATQAQVER
EECCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YYQDVEAFERGGT
HHHHHHHHHCCCC
>Mature Secondary Structure
MDMDKVIVITGASSGIGAELARQAAAKGARLVLAARRKAELKVVAGQCGHEALAVVTDAT
CCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHCCCCEEEEECCCCCHHHHHHHHHH
RRADMERLRDAALARFGRIDVWVNNAGRGITRSVAELTDEDLETMWRDNVNSALYGMQAV
HHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LPHFQSRDAGQLVNVSSTLGRLPIVPHRSAYSAAKHALNALSACLRQELRETYPGITVTV
HHHHCCCCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VMPGVVATAFGDNALGGGPDSRGLPGAQRVEDAATVILDSIERPRAEVYTQAATQAQVER
EECCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YYQDVEAFERGGT
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]