| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is phoD [H]
Identifier: 108757123
GI number: 108757123
Start: 1631694
End: 1633919
Strand: Direct
Name: phoD [H]
Synonym: MXAN_1389
Alternate gene names: 108757123
Gene position: 1631694-1633919 (Clockwise)
Preceding gene: 108759616
Following gene: 108762756
Centisome position: 17.85
GC content: 66.26
Gene sequence:
>2226_bases ATGTTTCCTGCTGAGTGGAAGAGCGCTCTAGACTCGCGGCCCTGTCTCCTAACCCGCGCAACCCGGAGTCCCGCCTTGTT CGATAGATTCAAACGCCGCAGTTTCCTCCAGGCCGTCGTCGCCGTTGCCGCGACCACTGCGTTCGGATGTTCCGACGACG AGACGACGTCGGATGCTGGCGAGAAGTACTTCCCGCAGTCCGTGTGCTCGGGTGACCCGCGTCCGGACAGCGTGGTGTTG TGGGTGCGGGCGGTGGACCCGGACAACGCGGGGGCGAACACGCAGGTGCGGCTGGAGGTGTCCACCAGCGAGTCGTTCAG CAGCGTGGTGCTGGACCAGCAGTTCACCGCGCAGGCGCAGTTCGACCATGCGTTGAAGGTGAAGGTCACCAACCTGTCGG CGCGCACGACGTACTACTACCGCTTCACCATCGACGCGAACGGTCAGAAGTACTCCACGGTGACGGGCCGCACCCGCACC GCGCCGGCCGCGGGCGACGACGTGCCGGTGAAGTTCGTCTTCGCCAGCTGCCAGGACTACATCGGTCGTTACTACAACGC GTGGCAGCACCTGCTGCAGCTCAACGAGGACCTCGACTTCGTCGTGTTCCTGGGCGACTACGTCTACGAGACGACGGGCG ACGCGTCGTTCCAGTCCGTGGACGGACGCGGCATCGTCTTCAGCGAGCCCGAGAAGGCGCTCCGCCAGGGCACGGGCCTG ACGGCGTTCTACGCGGCCAACTCGCTGTCCAACTACCGCGACCTCTACAAGACCCTGCGCACGGATAAGGTCATCCAGCA GGTGCACGAGCGCTACCCGTTCGTCATCACGTGGGATGACCACGAGTTCTCCGACGACTGCTGGGGCGACGTCGCCACGT ACACAGACGAGCGCACCAACGAGAAGCAGACCGAGCGCCGCCGCAACGCGGAGCAGGCCTTCTTCGAGTACATCCCCATG GACCACGGCGCGAGCGACGCGGGCGCCATCGACATCAACGCCGTGGTGGCCCAGCCGACGCGCATCTACCGCGACTTCGA GTTCGGCCGGAACCTGAAGCTGCTGGTGACGGACACGCGCACGTACCGCCCGGACCACCTCATCCCCGAGGACGCGTACC CGGGCAAGGTGGCGGTGCCGGCCGAGCAGCTGGCCCTGGTGCTGTCGTCGCTGCCGGAGGCCACGCAGGCGCAGTTGCAG TCCGACATGTTCGCCTACGTGGACATCGACGCGGCGGAGCTGGCGCCCTACAAGCAGATCCTCACGGGCGTGTACGTGCA GCAGGCCGTCGCCGCCGGGCTCACGTCGGGAGAGGCGACCGAGAAGGCGGGCGCCTGGGTCTCCGGTGGGCTGTCGCTGT TCTACGTCAACCAGGTGCTCAACGCCGTCAACCAGGCGCGTGAGGCGGCGGGCGATTCGGCCATTCCGCTCATCCCCGCG ACGGGCGCGCCGCGCGGTCTGGCCTATGCGCACATGGGCAAGACGGGCCTCTTCGGCATCCAGGGCTCGCGCTACGTCGT GGTGAAGCCCATCTTCGACCTGTACGCGGCCATCAAGTACATGGGCACCGCGGGAGCCTCGGAGGGCATCTTCGGCAACG AGCAGCAGGCGTGGCTCCAGGAGTCCGTGCAGGCGGACAACGCGTGGAAGATCATCGTCTCCTCGATTTCGCTCACCTCC ATGGTGTTCAAGCTGAGCGAGAAGGCGGACGTCCCGGACCCCACGCTGCGCCAGGACTTCTACTTCAACGTGGACCAGTG GGACGGCTTCCCCACGAAGAAGCAGGAGTTCTTGAAGTTCCTGCGCGACAGCCAGGTGAAGAACGCGCTGTTCATCTCCG GCGACATCCACGCGTCCTTCGCGTCCGTGGAGTCCGGCATCCCCGCGCTGACGACGCCGGCCATCTCCTCCGGCTCCATC AAGGAGCTGGCGGGCCTGGCCGTCATCGGCGCGGGCTTCTCCACCGGCAGCACGGTGTACCGGTACATCGTGACGGAGCT GGACAAGTCGCTGAAGGAAGCGCACCCCGGCATGGCGTTCGTGGACGGTGATGCCCACGGCTTCGTGGTGCTGGAGGTCG GCGGCACGGAGGCGAAGGCGGCCTTCCACCTCATCCCGAGCACGGAAATCGCCAAGGACTACTCGCTGCGCCAGCCCTCC GAGCTGACGGCGAAGTTCACCCGCCGCGACTTCATCATCAAGGACGGCACCATCACCTCCGCCTGA
Upstream 100 bases:
>100_bases CCGCGAGGTGGGCGGCCCTTTTGCTTGGTGTCCGGCGTCCTTCGCGTGGGTTCGCACCGGGCGTGGGTGACACGATGCGT TGTCGTTTCATTCCGTGGGG
Downstream 100 bases:
>100_bases GGAGAGAATGCCTCACCTGTTCGGTGAGGAGCGAGGGCCGCGCCGGGAGCCACGTGCTCCGGGCCGCGGCCCTCGGCCGT TTCAGGGTGGGGCGCGCCCG
Product: putative alkaline phosphatase
Products: NA
Alternate protein names: APaseD [H]
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAGEKYFPQSVCSGDPRPDSVVL WVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQFDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRT APAAGDDVPVKFVFASCQDYIGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTNEKQTERRRNAEQAFFEYIPM DHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTRTYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQ SDMFAYVDIDAAELAPYKQILTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQESVQADNAWKIIVSSISLTS MVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKFLRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSI KELAGLAVIGAGFSTGSTVYRYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS ELTAKFTRRDFIIKDGTITSA
Sequences:
>Translated_741_residues MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAGEKYFPQSVCSGDPRPDSVVL WVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQFDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRT APAAGDDVPVKFVFASCQDYIGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTNEKQTERRRNAEQAFFEYIPM DHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTRTYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQ SDMFAYVDIDAAELAPYKQILTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQESVQADNAWKIIVSSISLTS MVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKFLRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSI KELAGLAVIGAGFSTGSTVYRYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS ELTAKFTRRDFIIKDGTITSA >Mature_741_residues MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAGEKYFPQSVCSGDPRPDSVVL WVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQFDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRT APAAGDDVPVKFVFASCQDYIGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTNEKQTERRRNAEQAFFEYIPM DHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTRTYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQ SDMFAYVDIDAAELAPYKQILTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQESVQADNAWKIIVSSISLTS MVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKFLRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSI KELAGLAVIGAGFSTGSTVYRYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS ELTAKFTRRDFIIKDGTITSA
Specific function: Unknown
COG id: COG3540
COG function: function code P; Phosphodiesterase/alkaline phosphatase D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PhoD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018946 - InterPro: IPR006311 [H]
Pfam domain/function: PF09423 PhoD [H]
EC number: =3.1.3.1 [H]
Molecular weight: Translated: 81403; Mature: 81403
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAG CCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC EKYFPQSVCSGDPRPDSVVLWVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQ CCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHCHHHHHHHC FDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRTAPAAGDDVPVKFVFASCQDY CCCEEEEEEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH IGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL HHHHHHHHHHHHHHCCCCCEEEEECCHHEECCCCCCEECCCCCEEEECCHHHHHHCCCCC TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTN EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCCCCC EKQTERRRNAEQAFFEYIPMDHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTR HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCEEEEEECCC TYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQSDMFAYVDIDAAELAPYKQI CCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCHHHHHHHHCCCEEEEECCHHHHCHHHHH LTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA HHHHHHHHHHHHCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQ CCCCCCCEEEECCCCCEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH ESVQADNAWKIIVSSISLTSMVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKF HHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH LRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSIKELAGLAVIGAGFSTGSTVY HHHCCCCCEEEEECCCHHHHHHHHCCCCCEECCCCCCCCHHHHHCEEEEECCCCCCHHHH RYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS HHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEEEEECCCHHHHHCCCCCCCH ELTAKFTRRDFIIKDGTITSA HHHHHHHHCEEEEECCCCCCC >Mature Secondary Structure MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAG CCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC EKYFPQSVCSGDPRPDSVVLWVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQ CCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHCHHHHHHHC FDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRTAPAAGDDVPVKFVFASCQDY CCCEEEEEEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH IGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL HHHHHHHHHHHHHHCCCCCEEEEECCHHEECCCCCCEECCCCCEEEECCHHHHHHCCCCC TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTN EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCCCCC EKQTERRRNAEQAFFEYIPMDHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTR HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCEEEEEECCC TYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQSDMFAYVDIDAAELAPYKQI CCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCHHHHHHHHCCCEEEEECCHHHHCHHHHH LTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA HHHHHHHHHHHHCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQ CCCCCCCEEEECCCCCEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH ESVQADNAWKIIVSSISLTSMVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKF HHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH LRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSIKELAGLAVIGAGFSTGSTVY HHHCCCCCEEEEECCCHHHHHHHHCCCCCEECCCCCCCCHHHHHCEEEEECCCCCCHHHH RYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS HHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEEEEECCCHHHHHCCCCCCCH ELTAKFTRRDFIIKDGTITSA HHHHHHHHCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760916; 9384377; 7704254; 25878 [H]