| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is 108756969
Identifier: 108756969
GI number: 108756969
Start: 6776678
End: 6778687
Strand: Direct
Name: 108756969
Synonym: MXAN_5448
Alternate gene names: NA
Gene position: 6776678-6778687 (Clockwise)
Preceding gene: 108760944
Following gene: 108759586
Centisome position: 74.15
GC content: 69.85
Gene sequence:
>2010_bases ATGCACGGTGCAGCGCTGCAACCACGCCTCCGACAGGGCATGGAGGGCGGCGCCAACAGTCCCTCCTTCCCGTCGGGCGA CGCGTGTAGCGGCCCAGCACTCCCCCCGCGCTGCCACTGCGCCTCGTGCGTGGAACCACCACGTCCACAGCCCCCGCTGT CGTCACCAACGTGCGCAGGTAGTTGCCATTGCGCACGCCCACGCGCCCCACCATCGGCTGGTCGGATTGCACCGCTTCGT GCGCGGGGGGACTCACTTATCGGGACCCGATCGCGCCACGAGGCTGGCCTCGCGAGTAGGTTGTGTGCGTTGGTACTCCT AGACCCAAGCTCCGAGACAGACATGCACCGAAGTCCTGGCTCCATCCTCCCGTCCCGGGGGGCCTCTCCGCGTCCTTTCC TCCCCGTCAACGTCCTGCTGGTGTCCGTACTGCTGGCCCTTGGCTCCGGCTGTGGCGACTCCGAACCCGACAAGACGAAC GACTGTCCGAACCCGTCCGTCGGCTGCGGCCAGCAAGACTCCGGGACGCCCGACGCGGGCGCCCCCGACGCCGGCAATCC GGACGCGGGCATCCCCGACGCGGGCGACCCCGACGCCGGCAATCCGGACGCGGGGCATCCCGACGCTTGCAACCCCGACG CGGGCAATCCTGATGGCGGAGGCCCCCTGCCCACCGTCCCCACCCTCATCGAAAGCTCGCAGTCCGCCCACCAGGTATCG GCCGGGCAGACGGTCACCTTCCACGTCACCGGAAGGGATGACCTGGCGTGCCCGCTTCAGTTCTCCTGGGACGCCAGCTC GGGCACCCTGGGGAGTCCGGAGACCTCCGCCGCGACGAGTGATGTGACGTGGACAGCTCCGCACTGCGTGCTCTGGAGCT CCGAGGTCACCATCACCCTGACCGTCACGAACAACGCCCGGCTCTCCACCTCCAAGTCCTTCACGGTGTCCGCCCCGCGA TGCCCGGGCCCCGTGGTCTCGGGTGGTGTCTCACACTCGCTGGCCATTCGTGGCAATGGCACCCTATGGAGCTGGGGGCA CAACTCCTTCGGCCAGCTCGGCGATGAGACGAACGCCACGCGCCACGCCCCTGTGCAGGTGCCGGGGTTGACCGACGCTA CGGCCGTGGCAGGGGGCCACGCCCACTCGCTGGCCTCACGCGCCGACGGCACCGTCTGGGCCTGGGGGCTCAACGGCGGC GCGCTCGGTGATGGGACGACCTCCACCCAGTACGCCCCTGTGCAGGTATCCGGGTTGACCGGCGCCATCTCCGTTGCCGC GGGCTCCAGCTTCTCGCTGGCCCTGGACGCCGACGGCACCGTCTGGGCCTGGGGGATGAACGGGAGCGGCGAGCTCGGCG ACGGGACGACCACCGATCGCCTGACCCCGGTGCGGGTGTCTGGCTTGAGCAACATCACCGCGCTCGCCGCGGGCACCGGC CATTCACTGGCCCTCGGCGCCGACGGCACCGTCTGGGCCTGGGGACTCAACTTCCATGGCGAGCTCGGCGACGGAACGAC CGTCAGCCGCCCCCTCCCCGTGCAGGTGCCCGGGCTGACCGGCGTCATCGCCGTGGCCGCGGGCATGTACCATTCGGTGG CCTTGCGCAACGACGGCACCGTCTGGGCCTGGGGGTGGAACCTGAAAGGTGAGCTCGGTGATGGGACGACCACCCAGCGA GAGAGCCCCGTGCAGGTGCCCGGAGTCACAGGTGCCATCGCCGTGGCCGCGGGTGGCTACCATTCGCTGGCCCTGCTGAG CGACAACACCCTCCGGGCCTGGGGCAAGAACGAAGATCGCCAACTCGGCGACGGGACGAATACCGACCGACATACCGCCG TGCAGGTCTCCGGGCTGACCGGCGTCACGTCCGTCTTCGCGGGCGGCGGCCATTCACTCATCCTGCGTAACGACCAGGCA GTGTGGGCCTTTGGCTCCGATGTTTCCGGCCAGCTCGGAGACGGGAACACGCCGTCCGGCCACGGTCCCGTCCAGGTCTC CCTACCGTGA
Upstream 100 bases:
>100_bases TGACGAGAGCGGCCACGGAACCGCCCGTCCCCGAGGCCCCCCCCTGGCGGCCTCATGCAGCGGAAGTGACGGGGGCTGAT TTCAGCAGAGACATGTCGAG
Downstream 100 bases:
>100_bases CACCGTGAGGGAAGCCGGTGCCCGGCGGTGGAACCGCGAGTCCGCCGCCGGTGCCCCTCCGGCGCGAGGTGGCGCACCGC ATCGTCATTCGATGAGGCGT
Product: RCC1 repeat-containing protein
Products: NA
Alternate protein names: BNR Repeat Containing Protein; BNR Repeat-Containing Protein; Alpha-Tubulin Suppressor; S-Layer Domain Protein; RCC1 Repeat-Containing Protein; Cell Wall Anchor Domain-Containing Protein; Beta-Lactamase Inhibitory Protein II; RCC1 Domain-Containing Protein; S-Layer Domain-Containing Protein; RCC1 Domain-Containing Protein Alpha-Tubulin Suppressor; BNR Repeat Domain Protein; Regulator Of Chromosome Condensation Domain Protein; Bnr Repeat Domain Protein; Immunoglobulin I-Set Domain-Containing Protein; RCC1 Repeat Protein; Fibronectin Type III Domain-Containing Protein; RTX Family Exoprotein; Rhs Family Protein; RCC1 Repeat Domain Protein; Cysteine-Rich Repeat Protein; Ig Domain-Containing Domain-Containing Protein; Cell Surface Receptor IPT/TIG Domain-Containing Protein; Immunoglobulin-Like; IPT/TIG Domain Protein; BLIP-II Repeat-Containing Protein; Serine/Threonine Protein Kinase; RCC1 Repeat Domain-Containing Protein; Copper Amine Oxidase Domain Protein; Ig Domain Domain Protein; Hyalin; Outer Membrane Adhesin Like Protein; RCC1 Repeat- And Reductase Domain-Containing Protein; Cellulosome Dockerin Type I; Ig Family Protein; ATS1 Domain Repeat Lipoprotein; RCC1 Repeats Protein; Cell Wall Surface Anchor Family Protein; Regulator Of Chromosome Condensation-Like Protein; ATS1 Domain Repeat Protein; Copper Amine Oxidase Domain-Containing Protein; Lipoprotein; BNR Repeat Domain-Containing Protein
Number of amino acids: Translated: 669; Mature: 669
Protein sequence:
>669_residues MHGAALQPRLRQGMEGGANSPSFPSGDACSGPALPPRCHCASCVEPPRPQPPLSSPTCAGSCHCARPRAPPSAGRIAPLR ARGDSLIGTRSRHEAGLASRLCALVLLDPSSETDMHRSPGSILPSRGASPRPFLPVNVLLVSVLLALGSGCGDSEPDKTN DCPNPSVGCGQQDSGTPDAGAPDAGNPDAGIPDAGDPDAGNPDAGHPDACNPDAGNPDGGGPLPTVPTLIESSQSAHQVS AGQTVTFHVTGRDDLACPLQFSWDASSGTLGSPETSAATSDVTWTAPHCVLWSSEVTITLTVTNNARLSTSKSFTVSAPR CPGPVVSGGVSHSLAIRGNGTLWSWGHNSFGQLGDETNATRHAPVQVPGLTDATAVAGGHAHSLASRADGTVWAWGLNGG ALGDGTTSTQYAPVQVSGLTGAISVAAGSSFSLALDADGTVWAWGMNGSGELGDGTTTDRLTPVRVSGLSNITALAAGTG HSLALGADGTVWAWGLNFHGELGDGTTVSRPLPVQVPGLTGVIAVAAGMYHSVALRNDGTVWAWGWNLKGELGDGTTTQR ESPVQVPGVTGAIAVAAGGYHSLALLSDNTLRAWGKNEDRQLGDGTNTDRHTAVQVSGLTGVTSVFAGGGHSLILRNDQA VWAFGSDVSGQLGDGNTPSGHGPVQVSLP
Sequences:
>Translated_669_residues MHGAALQPRLRQGMEGGANSPSFPSGDACSGPALPPRCHCASCVEPPRPQPPLSSPTCAGSCHCARPRAPPSAGRIAPLR ARGDSLIGTRSRHEAGLASRLCALVLLDPSSETDMHRSPGSILPSRGASPRPFLPVNVLLVSVLLALGSGCGDSEPDKTN DCPNPSVGCGQQDSGTPDAGAPDAGNPDAGIPDAGDPDAGNPDAGHPDACNPDAGNPDGGGPLPTVPTLIESSQSAHQVS AGQTVTFHVTGRDDLACPLQFSWDASSGTLGSPETSAATSDVTWTAPHCVLWSSEVTITLTVTNNARLSTSKSFTVSAPR CPGPVVSGGVSHSLAIRGNGTLWSWGHNSFGQLGDETNATRHAPVQVPGLTDATAVAGGHAHSLASRADGTVWAWGLNGG ALGDGTTSTQYAPVQVSGLTGAISVAAGSSFSLALDADGTVWAWGMNGSGELGDGTTTDRLTPVRVSGLSNITALAAGTG HSLALGADGTVWAWGLNFHGELGDGTTVSRPLPVQVPGLTGVIAVAAGMYHSVALRNDGTVWAWGWNLKGELGDGTTTQR ESPVQVPGVTGAIAVAAGGYHSLALLSDNTLRAWGKNEDRQLGDGTNTDRHTAVQVSGLTGVTSVFAGGGHSLILRNDQA VWAFGSDVSGQLGDGNTPSGHGPVQVSLP >Mature_669_residues MHGAALQPRLRQGMEGGANSPSFPSGDACSGPALPPRCHCASCVEPPRPQPPLSSPTCAGSCHCARPRAPPSAGRIAPLR ARGDSLIGTRSRHEAGLASRLCALVLLDPSSETDMHRSPGSILPSRGASPRPFLPVNVLLVSVLLALGSGCGDSEPDKTN DCPNPSVGCGQQDSGTPDAGAPDAGNPDAGIPDAGDPDAGNPDAGHPDACNPDAGNPDGGGPLPTVPTLIESSQSAHQVS AGQTVTFHVTGRDDLACPLQFSWDASSGTLGSPETSAATSDVTWTAPHCVLWSSEVTITLTVTNNARLSTSKSFTVSAPR CPGPVVSGGVSHSLAIRGNGTLWSWGHNSFGQLGDETNATRHAPVQVPGLTDATAVAGGHAHSLASRADGTVWAWGLNGG ALGDGTTSTQYAPVQVSGLTGAISVAAGSSFSLALDADGTVWAWGMNGSGELGDGTTTDRLTPVRVSGLSNITALAAGTG HSLALGADGTVWAWGLNFHGELGDGTTVSRPLPVQVPGLTGVIAVAAGMYHSVALRNDGTVWAWGWNLKGELGDGTTTQR ESPVQVPGVTGAIAVAAGGYHSLALLSDNTLRAWGKNEDRQLGDGTNTDRHTAVQVSGLTGVTSVFAGGGHSLILRNDQA VWAFGSDVSGQLGDGNTPSGHGPVQVSLP
Specific function: Unknown
COG id: COG5184
COG function: function code DZ; Alpha-tubulin suppressor and related RCC1 domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI126131099, Length=324, Percent_Identity=33.3333333333333, Blast_Score=144, Evalue=3e-34, Organism=Homo sapiens, GI57242759, Length=272, Percent_Identity=33.0882352941176, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI126032348, Length=323, Percent_Identity=32.8173374613003, Blast_Score=133, Evalue=7e-31, Organism=Homo sapiens, GI37620181, Length=307, Percent_Identity=32.5732899022801, Blast_Score=129, Evalue=1e-29, Organism=Homo sapiens, GI63025188, Length=307, Percent_Identity=32.5732899022801, Blast_Score=129, Evalue=1e-29, Organism=Homo sapiens, GI7657152, Length=340, Percent_Identity=35, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI4557445, Length=227, Percent_Identity=35.6828193832599, Blast_Score=118, Evalue=2e-26, Organism=Homo sapiens, GI61563742, Length=275, Percent_Identity=34.1818181818182, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI259089405, Length=275, Percent_Identity=34.1818181818182, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI209969703, Length=362, Percent_Identity=30.6629834254144, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI29789090, Length=362, Percent_Identity=30.6629834254144, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI110825982, Length=253, Percent_Identity=32.8063241106719, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI6912330, Length=300, Percent_Identity=31, Blast_Score=94, Evalue=5e-19, Organism=Homo sapiens, GI4506581, Length=289, Percent_Identity=28.719723183391, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI78190492, Length=289, Percent_Identity=28.719723183391, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI114796644, Length=367, Percent_Identity=24.7956403269755, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI114796646, Length=377, Percent_Identity=25.1989389920424, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI4502801, Length=367, Percent_Identity=24.7956403269755, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI114796642, Length=367, Percent_Identity=24.7956403269755, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI13540582, Length=285, Percent_Identity=30.1754385964912, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI310110730, Length=153, Percent_Identity=36.6013071895425, Blast_Score=76, Evalue=9e-14, Organism=Homo sapiens, GI30039692, Length=238, Percent_Identity=30.672268907563, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI222136641, Length=320, Percent_Identity=24.6875, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI169170558, Length=265, Percent_Identity=29.4339622641509, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI169171160, Length=265, Percent_Identity=29.4339622641509, Blast_Score=68, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17510153, Length=335, Percent_Identity=32.2388059701493, Blast_Score=123, Evalue=4e-28, Organism=Caenorhabditis elegans, GI71988539, Length=341, Percent_Identity=29.3255131964809, Blast_Score=96, Evalue=5e-20, Organism=Saccharomyces cerevisiae, GI6321341, Length=354, Percent_Identity=26.8361581920904, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI281361147, Length=347, Percent_Identity=31.1239193083574, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI24655113, Length=347, Percent_Identity=34.0057636887608, Blast_Score=119, Evalue=6e-27, Organism=Drosophila melanogaster, GI24655115, Length=347, Percent_Identity=34.0057636887608, Blast_Score=119, Evalue=6e-27, Organism=Drosophila melanogaster, GI24580714, Length=310, Percent_Identity=25.8064516129032, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI24658888, Length=353, Percent_Identity=26.628895184136, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24658881, Length=353, Percent_Identity=26.628895184136, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI18859625, Length=353, Percent_Identity=26.628895184136, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24649791, Length=251, Percent_Identity=26.2948207171315, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67433; Mature: 67433
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: PS00626 RCC1_2 ; PS50012 RCC1_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHGAALQPRLRQGMEGGANSPSFPSGDACSGPALPPRCHCASCVEPPRPQPPLSSPTCAG CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC SCHCARPRAPPSAGRIAPLRARGDSLIGTRSRHEAGLASRLCALVLLDPSSETDMHRSPG CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCC SILPSRGASPRPFLPVNVLLVSVLLALGSGCGDSEPDKTNDCPNPSVGCGQQDSGTPDAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APDAGNPDAGIPDAGDPDAGNPDAGHPDACNPDAGNPDGGGPLPTVPTLIESSQSAHQVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHEEC AGQTVTFHVTGRDDLACPLQFSWDASSGTLGSPETSAATSDVTWTAPHCVLWSSEVTITL CCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEEECCCEEEEE TVTNNARLSTSKSFTVSAPRCPGPVVSGGVSHSLAIRGNGTLWSWGHNSFGQLGDETNAT EEECCCEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCCCEEECCCCCHHCCCCCCCCC RHAPVQVPGLTDATAVAGGHAHSLASRADGTVWAWGLNGGALGDGTTSTQYAPVQVSGLT CCCCEECCCCCCHHHHCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECEEEEECCC GAISVAAGSSFSLALDADGTVWAWGMNGSGELGDGTTTDRLTPVRVSGLSNITALAAGTG EEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCC HSLALGADGTVWAWGLNFHGELGDGTTVSRPLPVQVPGLTGVIAVAAGMYHSVALRNDGT CEEEECCCCCEEEEECEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHEEEEEECCCE VWAWGWNLKGELGDGTTTQRESPVQVPGVTGAIAVAAGGYHSLALLSDNTLRAWGKNEDR EEEEECEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCEEEECCCCCCC QLGDGTNTDRHTAVQVSGLTGVTSVFAGGGHSLILRNDQAVWAFGSDVSGQLGDGNTPSG CCCCCCCCCCEEEEEEECCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCC HGPVQVSLP CCCEEEECC >Mature Secondary Structure MHGAALQPRLRQGMEGGANSPSFPSGDACSGPALPPRCHCASCVEPPRPQPPLSSPTCAG CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC SCHCARPRAPPSAGRIAPLRARGDSLIGTRSRHEAGLASRLCALVLLDPSSETDMHRSPG CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCC SILPSRGASPRPFLPVNVLLVSVLLALGSGCGDSEPDKTNDCPNPSVGCGQQDSGTPDAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APDAGNPDAGIPDAGDPDAGNPDAGHPDACNPDAGNPDGGGPLPTVPTLIESSQSAHQVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHEEC AGQTVTFHVTGRDDLACPLQFSWDASSGTLGSPETSAATSDVTWTAPHCVLWSSEVTITL CCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEEECCCEEEEE TVTNNARLSTSKSFTVSAPRCPGPVVSGGVSHSLAIRGNGTLWSWGHNSFGQLGDETNAT EEECCCEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCCCEEECCCCCHHCCCCCCCCC RHAPVQVPGLTDATAVAGGHAHSLASRADGTVWAWGLNGGALGDGTTSTQYAPVQVSGLT CCCCEECCCCCCHHHHCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECEEEEECCC GAISVAAGSSFSLALDADGTVWAWGMNGSGELGDGTTTDRLTPVRVSGLSNITALAAGTG EEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCC HSLALGADGTVWAWGLNFHGELGDGTTVSRPLPVQVPGLTGVIAVAAGMYHSVALRNDGT CEEEECCCCCEEEEECEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHEEEEEECCCE VWAWGWNLKGELGDGTTTQRESPVQVPGVTGAIAVAAGGYHSLALLSDNTLRAWGKNEDR EEEEECEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCEEEECCCCCCC QLGDGTNTDRHTAVQVSGLTGVTSVFAGGGHSLILRNDQAVWAFGSDVSGQLGDGNTPSG CCCCCCCCCCEEEEEEECCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCC HGPVQVSLP CCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA