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The map label for this gene is fliA [H]

Identifier: 108756900

GI number: 108756900

Start: 2844214

End: 2845050

Strand: Direct

Name: fliA [H]

Synonym: MXAN_2437

Alternate gene names: 108756900

Gene position: 2844214-2845050 (Clockwise)

Preceding gene: 108761288

Following gene: 108761568

Centisome position: 31.12

GC content: 64.64

Gene sequence:

>837_bases
TTGGCTCTGGGCGACGACAGGCAGGTCATCCTCGAGAAGTACGGCCCCTACGTCCGGTCGCTGGCGGCGACCGTGCGCAA
GCAGTTCAACGCCCAGCTGGAGCTGGATGAGCTGCTGGCCTACGGCCAGATAGGCCTTCTGGAGGCCGCCGAGCGGTTCG
ACCCGAAGGTCGGGGCCAACTTCCTCACCTTCGCGCACTACCGCATCAAGGGCGCCATCTTCGACGGGCTTCGGAAGATG
GGCGTGCTGCGGGGTTCCGATGCCCGCAACGCCTATGTGGGAGAGCGGGCGGCGGCGTATCTGGGAAATCTTTCGGATCG
TGAGGCCGGAGCAGGCAACCGCGGCAGCTCATTCGACGATGATGTGAATGACATCTCGGATGCGGTGACGGGGCTGGCGA
TGGTTTTCGCCACCAGCATCGAAGGCGCGGACACGGCGGGTTACACCGACGAGTCGCTCCCCGTCGACATCCGGATGGAG
CAGGAGCAGCTGAAGACGCGGGTGCGGGCGGCGATCGAGAAGCTCCCGGAGAAGGAGCGAAAGCTCCTGATGGGGTACTA
CTTCCAGGGCAGGACGCTGGAGGAAGCGGGAGCGGAGATAGGGCAGTCGAAGAGCTGGGCTTCGCGGCTGCATGCGCGGG
CAATCGACCGGCTCAAGGAACTCTTGAATGAGGAGGAGGAGCTCCCTCCTTCTCCGATGGATGCAAGGAGGGTCTCACAT
GGCGGGTCCGATGGCCGGAGTCTCCGCGGCGCAGGTCGCGCAGCAGAAGCTGCAGGATCAGGGCGCTCAGCAGACGAACA
AGCAGGGCGCGTCGAAGTTCGACGGAGTTCTCGCTGA

Upstream 100 bases:

>100_bases
TCTTCCTCCCTCACCACCAAGATTGCAGACGCGCTCCAGGATGATCCGCGGCTGAATCAGGTCCTCGAGCGGCTGTGGTC
TAAGGCCGAGTGAGCGGCGC

Downstream 100 bases:

>100_bases
CAAGGCGCAGGGCGCCGGTCAGGTGGACGCCGCCCAGCAGGTGAACAAGGCCCAGGCGGCGCAGGCCACCCAGCGCACGG
ATGCCGTGCGTCAGGTGGAG

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-27; Sigma-28; Sigma-F factor [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MALGDDRQVILEKYGPYVRSLAATVRKQFNAQLELDELLAYGQIGLLEAAERFDPKVGANFLTFAHYRIKGAIFDGLRKM
GVLRGSDARNAYVGERAAAYLGNLSDREAGAGNRGSSFDDDVNDISDAVTGLAMVFATSIEGADTAGYTDESLPVDIRME
QEQLKTRVRAAIEKLPEKERKLLMGYYFQGRTLEEAGAEIGQSKSWASRLHARAIDRLKELLNEEEELPPSPMDARRVSH
GGSDGRSLRGAGRAAEAAGSGRSADEQAGRVEVRRSSR

Sequences:

>Translated_278_residues
MALGDDRQVILEKYGPYVRSLAATVRKQFNAQLELDELLAYGQIGLLEAAERFDPKVGANFLTFAHYRIKGAIFDGLRKM
GVLRGSDARNAYVGERAAAYLGNLSDREAGAGNRGSSFDDDVNDISDAVTGLAMVFATSIEGADTAGYTDESLPVDIRME
QEQLKTRVRAAIEKLPEKERKLLMGYYFQGRTLEEAGAEIGQSKSWASRLHARAIDRLKELLNEEEELPPSPMDARRVSH
GGSDGRSLRGAGRAAEAAGSGRSADEQAGRVEVRRSSR
>Mature_277_residues
ALGDDRQVILEKYGPYVRSLAATVRKQFNAQLELDELLAYGQIGLLEAAERFDPKVGANFLTFAHYRIKGAIFDGLRKMG
VLRGSDARNAYVGERAAAYLGNLSDREAGAGNRGSSFDDDVNDISDAVTGLAMVFATSIEGADTAGYTDESLPVDIRMEQ
EQLKTRVRAAIEKLPEKERKLLMGYYFQGRTLEEAGAEIGQSKSWASRLHARAIDRLKELLNEEEELPPSPMDARRVSHG
GSDGRSLRGAGRAAEAAGSGRSADEQAGRVEVRRSSR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is specific for class 3 flagellar operons [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=225, Percent_Identity=33.7777777777778, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 30357; Mature: 30226

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGDDRQVILEKYGPYVRSLAATVRKQFNAQLELDELLAYGQIGLLEAAERFDPKVGAN
CCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCH
FLTFAHYRIKGAIFDGLRKMGVLRGSDARNAYVGERAAAYLGNLSDREAGAGNRGSSFDD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
DVNDISDAVTGLAMVFATSIEGADTAGYTDESLPVDIRMEQEQLKTRVRAAIEKLPEKER
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHH
KLLMGYYFQGRTLEEAGAEIGQSKSWASRLHARAIDRLKELLNEEEELPPSPMDARRVSH
HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC
GGSDGRSLRGAGRAAEAAGSGRSADEQAGRVEVRRSSR
CCCCCCHHCCCCCHHHHCCCCCCCHHHHCCCHHCCCCC
>Mature Secondary Structure 
ALGDDRQVILEKYGPYVRSLAATVRKQFNAQLELDELLAYGQIGLLEAAERFDPKVGAN
CCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCH
FLTFAHYRIKGAIFDGLRKMGVLRGSDARNAYVGERAAAYLGNLSDREAGAGNRGSSFDD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
DVNDISDAVTGLAMVFATSIEGADTAGYTDESLPVDIRMEQEQLKTRVRAAIEKLPEKER
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHH
KLLMGYYFQGRTLEEAGAEIGQSKSWASRLHARAIDRLKELLNEEEELPPSPMDARRVSH
HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC
GGSDGRSLRGAGRAAEAAGSGRSADEQAGRVEVRRSSR
CCCCCCHHCCCCCHHHHCCCCCCCHHHHCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]