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The map label for this gene is rnhA

Identifier: 108756881

GI number: 108756881

Start: 7095320

End: 7095763

Strand: Direct

Name: rnhA

Synonym: MXAN_5728

Alternate gene names: NA

Gene position: 7095320-7095763 (Clockwise)

Preceding gene: 108759984

Following gene: 108757881

Centisome position: 77.63

GC content: 67.79

Gene sequence:

>444_bases
ATGAGCCCGCCGGTGGATGCGGCGCCCGATTCCGAATCGCATCCGCGGCTGCGCGTCTATTCAGATGGCGCGGCTCGGGG
CAACCCAGGGCCCGCAGGCGCGGGCGCGGTACTGATGGACCCCGCAGGCAACGTGGTGGCGCGGCTCGGGCGGTTCCTGG
GGCATCAGACGAACAACTGCGCGGAGTACATGGGCCTGCTGCTGGGCCTGAAGCATGCGCAGTCACTGGGCGCGCGCGAG
GTGGAAGTCTTCGCCGACAGCGAGCTGCTGATTCGTCAGCTCGGCGGGCGCTACCAGGTGAAGAGCCCGACGCTGAAGCC
GCTGTATGAAGAGGCGCGGAAGCTGCTCAAGGGCTTCACCAAGGTGAAGCTGCACCACGTCCCCCGCGCGCAGAACGCCG
AGGCGGATGAGATGAGCAACCGCGCCATCGACGAGCGGATGTAG

Upstream 100 bases:

>100_bases
ACACCTCGGGCAGCTCATTGAGGATGCCGCACAGCGGCTCGGCGGGATGTCGCCAGCCTCCGCTGCGTCGGCTCCGGGCA
CGCAGGTGCCGGCTGGGGCC

Downstream 100 bases:

>100_bases
TCATTCCAGGGACGGACATCAGGGGGGGAATTGGTGACTGCCAACAAGCGCCTGTGGTTCATCCGTGCGGGCCGCGATGC
CGCGTTCTTCGATGCCTTCA

Product: ribonuclease H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSPPVDAAPDSESHPRLRVYSDGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNCAEYMGLLLGLKHAQSLGARE
VEVFADSELLIRQLGGRYQVKSPTLKPLYEEARKLLKGFTKVKLHHVPRAQNAEADEMSNRAIDERM

Sequences:

>Translated_147_residues
MSPPVDAAPDSESHPRLRVYSDGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNCAEYMGLLLGLKHAQSLGARE
VEVFADSELLIRQLGGRYQVKSPTLKPLYEEARKLLKGFTKVKLHHVPRAQNAEADEMSNRAIDERM
>Mature_146_residues
SPPVDAAPDSESHPRLRVYSDGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNCAEYMGLLLGLKHAQSLGAREV
EVFADSELLIRQLGGRYQVKSPTLKPLYEEARKLLKGFTKVKLHHVPRAQNAEADEMSNRAIDERM

Specific function: Unknown

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013078
- InterPro:   IPR012337
- InterPro:   IPR014636
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00300 PGAM; PF00075 RnaseH [H]

EC number: NA

Molecular weight: Translated: 15941; Mature: 15810

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPVDAAPDSESHPRLRVYSDGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNC
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCH
AEYMGLLLGLKHAQSLGAREVEVFADSELLIRQLGGRYQVKSPTLKPLYEEARKLLKGFT
HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHH
KVKLHHVPRAQNAEADEMSNRAIDERM
HHHHHCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SPPVDAAPDSESHPRLRVYSDGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNC
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCH
AEYMGLLLGLKHAQSLGAREVEVFADSELLIRQLGGRYQVKSPTLKPLYEEARKLLKGFT
HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHH
KVKLHHVPRAQNAEADEMSNRAIDERM
HHHHHCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]