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The map label for this gene is ycdC [C]

Identifier: 108756878

GI number: 108756878

Start: 3349183

End: 3349770

Strand: Reverse

Name: ycdC [C]

Synonym: MXAN_2871

Alternate gene names: 108756878

Gene position: 3349770-3349183 (Counterclockwise)

Preceding gene: 108761088

Following gene: 108759975

Centisome position: 36.65

GC content: 68.03

Gene sequence:

>588_bases
ATGCCCTCGACCCGACCGCCCACTGCAAAGCCAGCCGTTCGGCAAAGAGACTCCGAACGCACACGCACCGCCCTGATGAC
CGCCGCGCGGGCCCTCTTCTCCACACAGGGCTTCGCCAACACGGGGGTGCGGGACATCGCGGCGCTGGCCGGAGTCAACT
CCTCGCTCGTGGGCCGCTACTTCGGCTCCAAGCAGGGGCTGTACCGGGAGACGCTGGCGCAGGTGCTCGATATCGGCCCG
TTGCTCCAGATAGACAGGCGCCAGTTTGGAGAGACGGTGGTGTCCCTCTTCCTGGGTGCACACGACGCCTCGGGGCCGTT
GGCGATGCTCATCCTGTCGGCGTCCGACCCCGAAGCCCATGCGACCAGCGTCGAACTGCTCCAGAAGCAGGTCATCGCCC
CCCTGGCCCGCTGGCTGGGCGCTCCGGATGGCGAGGGGCGCGCGGCCCGGCTCAACATCCTCTGGAATGGCCTGCTCGTC
AGCGGGCGGCTGCTGCCCATCCAACGGCTCTCAGAAGGGCTCGACACGTCCACCCAGCGTTGGCTGGCGGCCGCAATCCA
GTCAGTCATTGACGAAGGCGCGACCTGA

Upstream 100 bases:

>100_bases
AGTCATCCGCACATGTCCTTTCGAGTTGGAAGCCACGCACGACGTACACAGTCGTTTACTTACATAGACATAACTCAAGC
GGAATTATAAGTAAACCCAG

Downstream 100 bases:

>100_bases
GGACGCGGCGGTCCTGCCGTGGCAGCGGGAGCATGTCCGCCCCATCGACTACCGTCGCTGTCCTTCGAGCTTCGTTCCCT
GCCCTGGAGTCGTTCATGTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPSTRPPTAKPAVRQRDSERTRTALMTAARALFSTQGFANTGVRDIAALAGVNSSLVGRYFGSKQGLYRETLAQVLDIGP
LLQIDRRQFGETVVSLFLGAHDASGPLAMLILSASDPEAHATSVELLQKQVIAPLARWLGAPDGEGRAARLNILWNGLLV
SGRLLPIQRLSEGLDTSTQRWLAAAIQSVIDEGAT

Sequences:

>Translated_195_residues
MPSTRPPTAKPAVRQRDSERTRTALMTAARALFSTQGFANTGVRDIAALAGVNSSLVGRYFGSKQGLYRETLAQVLDIGP
LLQIDRRQFGETVVSLFLGAHDASGPLAMLILSASDPEAHATSVELLQKQVIAPLARWLGAPDGEGRAARLNILWNGLLV
SGRLLPIQRLSEGLDTSTQRWLAAAIQSVIDEGAT
>Mature_194_residues
PSTRPPTAKPAVRQRDSERTRTALMTAARALFSTQGFANTGVRDIAALAGVNSSLVGRYFGSKQGLYRETLAQVLDIGPL
LQIDRRQFGETVVSLFLGAHDASGPLAMLILSASDPEAHATSVELLQKQVIAPLARWLGAPDGEGRAARLNILWNGLLVS
GRLLPIQRLSEGLDTSTQRWLAAAIQSVIDEGAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20855; Mature: 20724

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSTRPPTAKPAVRQRDSERTRTALMTAARALFSTQGFANTGVRDIAALAGVNSSLVGRY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
FGSKQGLYRETLAQVLDIGPLLQIDRRQFGETVVSLFLGAHDASGPLAMLILSASDPEAH
HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHH
ATSVELLQKQVIAPLARWLGAPDGEGRAARLNILWNGLLVSGRLLPIQRLSEGLDTSTQR
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHCCCCHHHHH
WLAAAIQSVIDEGAT
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
PSTRPPTAKPAVRQRDSERTRTALMTAARALFSTQGFANTGVRDIAALAGVNSSLVGRY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
FGSKQGLYRETLAQVLDIGPLLQIDRRQFGETVVSLFLGAHDASGPLAMLILSASDPEAH
HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHH
ATSVELLQKQVIAPLARWLGAPDGEGRAARLNILWNGLLVSGRLLPIQRLSEGLDTSTQR
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHCCCCHHHHH
WLAAAIQSVIDEGAT
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA