| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is 108563905
Identifier: 108563905
GI number: 108563905
Start: 1542044
End: 1542400
Strand: Direct
Name: 108563905
Synonym: HPAG1_1480
Alternate gene names: NA
Gene position: 1542044-1542400 (Clockwise)
Preceding gene: 108563904
Following gene: 108563908
Centisome position: 96.6
GC content: 29.69
Gene sequence:
>357_bases ATGGCAATAGATGAAAAATTTAGGGGTAGTGTACAAGGCGATCAAATAAGAGATTATTTTAAGAAGTGTGATGAAATTTT AAATCAAAATAGCTTGAATTCCGCCTTCTTATTAAAGAGAATGCACACGCTACACTTTTATCCAACAAAATTAAAAAATA TTCAATTTCTCCCCCCACACATACAAACTTATATTATAGATACTATGAAAAAATATGATTTTAAATTTTGTGGTGGAATT TCTTTCTATCAAGAATACTTTAACGCCAATAACTATGAGAATCTAAAAGAGTGCGTATATGAATTGATGAGCAAAGGGAT TGAAATGGAACTTTCTTGGCAAGACAATGCTTATTAA
Upstream 100 bases:
>100_bases AAAAGTAAGTTTCACATAAAAACAACAGAATTGGACACTATTTAAGCTAGGTTTAGTATAATAAGCCCATTCATTAAATT TTATTATAAGGATAGATTAG
Downstream 100 bases:
>100_bases AATTCTTATATAAAAAGAGCAAACATTTGACTCTGTTTTCATTGAATAAATAAAAAAGAGCTTGATTTAATCAAGTAATA GTTTTAAAAATGAAACGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 118; Mature: 117
Protein sequence:
>118_residues MAIDEKFRGSVQGDQIRDYFKKCDEILNQNSLNSAFLLKRMHTLHFYPTKLKNIQFLPPHIQTYIIDTMKKYDFKFCGGI SFYQEYFNANNYENLKECVYELMSKGIEMELSWQDNAY
Sequences:
>Translated_118_residues MAIDEKFRGSVQGDQIRDYFKKCDEILNQNSLNSAFLLKRMHTLHFYPTKLKNIQFLPPHIQTYIIDTMKKYDFKFCGGI SFYQEYFNANNYENLKECVYELMSKGIEMELSWQDNAY >Mature_117_residues AIDEKFRGSVQGDQIRDYFKKCDEILNQNSLNSAFLLKRMHTLHFYPTKLKNIQFLPPHIQTYIIDTMKKYDFKFCGGIS FYQEYFNANNYENLKECVYELMSKGIEMELSWQDNAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14151; Mature: 14020
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIDEKFRGSVQGDQIRDYFKKCDEILNQNSLNSAFLLKRMHTLHFYPTKLKNIQFLPPH CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH IQTYIIDTMKKYDFKFCGGISFYQEYFNANNYENLKECVYELMSKGIEMELSWQDNAY HHHHHHHHHHHHCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC >Mature Secondary Structure AIDEKFRGSVQGDQIRDYFKKCDEILNQNSLNSAFLLKRMHTLHFYPTKLKNIQFLPPH CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH IQTYIIDTMKKYDFKFCGGISFYQEYFNANNYENLKECVYELMSKGIEMELSWQDNAY HHHHHHHHHHHHCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA