| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is trxA [H]
Identifier: 108563882
GI number: 108563882
Start: 1516678
End: 1516992
Strand: Direct
Name: trxA [H]
Synonym: HPAG1_1457
Alternate gene names: 108563882
Gene position: 1516678-1516992 (Clockwise)
Preceding gene: 108563881
Following gene: 108563883
Centisome position: 95.01
GC content: 40.32
Gene sequence:
>315_bases ATGTTAGAAGTGATTAACGGGAAGAATTACGCAGAGAAAATCGCTCATCAAGCGGTGGTGGTTAATGTTGGGGCGAATTG GTGTCCGGATTGCAGGAAGATTGAGCCGATCATGGAAAATTTAGCCAAAACTTACAAAGGCAAGGTGGAATTTTTTAAGG TTTCTTTTGATGAGAGCCAGGATTTAAAAGAGAGTTTAGGCATTCGCAAGATCCCTACTTTGATTTTTTATAAAAACGCC AAAGAAGTGGGTGAAAGGCTTGTAGAGCCTGGATCTTCAAAACCGATTGAAGACGCGATTAAAACGCTCTTATAA
Upstream 100 bases:
>100_bases CTGCATGCGTTTATGGCTAATAGGGCTAATACTAAAGGGGATTAGCGCTTGAGTTATGCTATACTTCGGCGGTTGGGGGA AATAAAAATTAAGGATTATC
Downstream 100 bases:
>100_bases AGAGCGTTAAAGAGTCTTGTTATTAAAATAAAAACTCATAGAAATCTTTTTTAGCCCCTTTTTCTATAAAGGAGCTAACT TCAAATAGCTTTTATCTTGT
Product: thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 104; Mature: 104
Protein sequence:
>104_residues MLEVINGKNYAEKIAHQAVVVNVGANWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNA KEVGERLVEPGSSKPIEDAIKTLL
Sequences:
>Translated_104_residues MLEVINGKNYAEKIAHQAVVVNVGANWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNA KEVGERLVEPGSSKPIEDAIKTLL >Mature_104_residues MLEVINGKNYAEKIAHQAVVVNVGANWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNA KEVGERLVEPGSSKPIEDAIKTLL
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788936, Length=65, Percent_Identity=41.5384615384615, Blast_Score=62, Evalue=1e-11, Organism=Escherichia coli, GI87082331, Length=67, Percent_Identity=37.3134328358209, Blast_Score=60, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: 1.8.1.8 [C]
Molecular weight: Translated: 11725; Mature: 11725
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEVINGKNYAEKIAHQAVVVNVGANWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQ CCEECCCCCHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCH DLKESLGIRKIPTLIFYKNAKEVGERLVEPGSSKPIEDAIKTLL HHHHHCCCCCCCHHEEECCHHHHHHHHHCCCCCCCHHHHHHHHC >Mature Secondary Structure MLEVINGKNYAEKIAHQAVVVNVGANWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQ CCEECCCCCHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCH DLKESLGIRKIPTLIFYKNAKEVGERLVEPGSSKPIEDAIKTLL HHHHHCCCCCCCHHEEECCHHHHHHHHHCCCCCCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA