Click here to switch to the map view.

The map label for this gene is 108563854

Identifier: 108563854

GI number: 108563854

Start: 1486959

End: 1487405

Strand: Direct

Name: 108563854

Synonym: HPAG1_1429

Alternate gene names: NA

Gene position: 1486959-1487405 (Clockwise)

Preceding gene: 108563853

Following gene: 108563855

Centisome position: 93.15

GC content: 38.26

Gene sequence:

>447_bases
ATGGGATTTTTGAATGGGTATTTTTTATGGGTTAAGGCTTTCCATGTGATAGCGGTCATTTCGTGGATGGCGGCGTTATT
TTATTTGCCGCGCCTTTTTGTCTATCATGCAGAAAATGCACATAAAAAAGAGTTTGTAGGAGTGGTTCAAATCCAAGAAA
AAAAGCTCTATTCCTTTATCGCTTCACCGGCGATGGGTTTCACGCTTATTACAGGGATTTTAATGCTGTTGATTGCCCCT
GAAATGTTTAAAGGCGGGGGTTGGTTGCATGCTAAATTGGCTTTAGTGGTTTTACTTTTAGCCTATCATTTTTATTGCAA
AAAATGCATGCGTGAGCTAGAAAAAGACCCTACAAGAAGAAACGCAAGGTTTTATCGTGTGTTTAATGAAATACCCACGA
TTTTAATGATCCTCATTGTGATTTTAGTGGTTGTCAAGCCTTTTTAA

Upstream 100 bases:

>100_bases
AAGAATTTTTCAAACCAAAGCGTGGAAGTGGAAATCAGCGGCACGAGAGAAAATTTGCAAGCGTTTTTGCAACAAAATAA
GATAAATTAGGGAGAGTGGT

Downstream 100 bases:

>100_bases
AGACAAGCCATGAAGAAAGAAAAGTCATGAAAAAAGAAAATCGCCTCAAGCAAGAAAAAATCATCAACATGTTTGATGAT
ATAGCCAGCTCTTACGATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MGFLNGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGILMLLIAP
EMFKGGGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRRNARFYRVFNEIPTILMILIVILVVVKPF

Sequences:

>Translated_148_residues
MGFLNGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGILMLLIAP
EMFKGGGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRRNARFYRVFNEIPTILMILIVILVVVKPF
>Mature_147_residues
GFLNGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGILMLLIAPE
MFKGGGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRRNARFYRVFNEIPTILMILIVILVVVKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 17159; Mature: 17028

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFLNGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ASPAMGFTLITGILMLLIAPEMFKGGGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRR
HCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
NARFYRVFNEIPTILMILIVILVVVKPF
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GFLNGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ASPAMGFTLITGILMLLIAPEMFKGGGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRR
HCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
NARFYRVFNEIPTILMILIVILVVVKPF
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]