| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is res [H]
Identifier: 108563819
GI number: 108563819
Start: 1444608
End: 1447508
Strand: Direct
Name: res [H]
Synonym: HPAG1_1394
Alternate gene names: 108563819
Gene position: 1444608-1447508 (Clockwise)
Preceding gene: 108563818
Following gene: 108563820
Centisome position: 90.49
GC content: 36.33
Gene sequence:
>2901_bases GTGAAAATCAAATTCAAACGATTGGACTATCAGGAGCAATGCCGGGACCAAATTTTAGGGGTGTTTAAGGGGATTGATTT GAGAGAGCCAGAAAATGACGCTCAAAGGATTTCTAACCCTGTTTTTGAAATAGAGGCGATCAAAGATCTTTTATTAGAAA ATATTGAGAATTTGCGATCGAAACAAAAAATAACCCAGGGGAGCATGGGGATTGACAAGTCGTTAAACTGCGATATTTTA ATGGAAACAGGCACCGGGAAGACCTTTTGCTTTTTGGAATGCGTTTATGCCTTGCACCAAAACTACCGTTTGTCAAAATT TATTGTTTTAACGCCAAGCAACGCCATTAAATTAGGGGTTTTAAAGAGCGTTGGAATCACCAGAGAATTTTTTAAAAGCG AGTATTCTACGCATTTAGAAAGCTATGAAGATATAGAAAGATTTATTCTAGCGAGTAACCATAAATGCTGCGTGTTGGTG ATGACTTTTTCTGCCTTCAATAAAGAGAAAAACACTATTAATCAATCATGCTTAGAAAACACGAATCTATTCAATGGCGC AAAAAGTTACATGCAAGCTTTAGCGAATATGCGCCCTATCGTCATCATGGACGAACCGCACCGATTTTTAGGCGATAAAA CAAAAAAATATTTGGAACAATTAAACGCTTTAATCACGCTCAGGTTTGGGGCGACTTTTAAAGATGATTATAATAATTTG ATTTATGCGCTAGACAGCAAAAAAGCGTTTGATTGCGCCCTAGTGAAAAGCATCAGCGTGGCGTCTGTGGGGGAGAGTGA TGAGTGTTTTTTAGAGCTTAAAGGGATTGAAAAAAAAGAAGCTGCAATTAACTACACGAATTTAGAAAATAAAACTCAAA GCGTCAAGGTCAAAGAGCATGATAATTTAGGGGTGGTAACTCAAATCAGCGCTTTAGAAGATTACATTGTAGAAAAAATC ACTAAAACTGAGATTCGTTTTCTCAATGGCTTTAATTTGTTGTTGGATCAAAAAGAGCCTTTTTCTCATCTTTTAGAGGG CGAGCAAGAAGTGATGCTGAAAGAAGCGATAAAAAGCCATTTTGAAAGAGAAGAAGGGCTTTTTAAAAAAGGGATTAAAG CCTTGTGCATGGTGTTTATTAGCGGGGTGAATAGCTATTTAAGCGAGAATGAAAAGCCGGCTAAATTGGCCCTTTTATTT GAAAAACTTTACCAACAAAAGCTTGAAGAAGTCTTAAAAAAGCCTTTAGATGAAAATTACAGAGCGTATTTAGAGCGCAC TAAAGACGCTATTTACAAAGTGCATGGAGGGTATTTTGCTAAAAGCAAGAAAGAGAGCGATGAAGCCCAAGTGATCGCGC TCATTTTAAAAGAAAAAGAAAAATTGCTGAGTTTTGATTCCGATCTCAGGTTTATTTTTTCGCAATGGGCGTTGCAAGAG GGGTGGGATAACCCTAACGTGATGACGATTTGCAAATTAGCCCCTAGCCATTCCAATATCACTAAATTGCAACAAATCGG TAGAGGGCTAAGGCTCGCTGTGAATGATAAGGGCGAACGCATCACTAAAGAGCATGCTGATTTTGATTTTGTCAATGAAT TGGTGGTGATCGTGCCGCAAGTGGAGGGGGATTTTGTGGGAGCGATCCAGCAAGAGATAAGCGAGCACAGCTTGATTAAA CAAGTATTTAGCGCAGAAGAGTTAGAAAAAAGCGGCGTTGTTAAAAAAGGGTATTACGGGGTTTTATTGGAGACATTAGA GGGTTTGGGTTTTGGAGAAAAAACAGGTGATGAAAACTTTAAACTCACTCTCAATCAAAACGAATTTTTAAAAAAAGAGC CAGAACTTGAAAGATTAAAAGATGAAAAATACTTGGATTTTGAAAAATTAAAAGATTTTTTAAAAGATCGTCTAGTTGGC CATTTTAGAGTTATGAACAAAAACGAGCGAAAAACTGAAAAAATCAAAATCAATAAAGAAAATTTTAAAAAATTTGAAAC CTTATGGGATGGTTTGAATCATCAAGCCCGGATCGCTTATGCCATTGATAGCGAGAGCTTGATTGATGAGATTGTCAAAA ATATTAATTCTTCTTTTAAGGTCAGTTCAAAAATCGTTTCGGTTACGACTCATAAAAAAGTAGAAACTATGGGAAATAAC GCCAAAACAGAGATTTTTGAGCGAGAAAGCGCATGCGTGTGGAGCTTGCATGAATTTATCAGCGCCTTGTCTAATAAGGT GAAATTGAGTTTTAAAAGCGTGGCTAAAGTGTTGGAAAACATTGATGAAAACAAGTTTAATGAAATTAAAAAAAACGAAC AAGAGAGCTTAAAGCACTTAGAAGATCTGTTTTTGGAAATCATTTATCAAAATATTAAAGATAAAATCTCCTATCAAATG CGCGAAACGACGATTAAAAACAGAAAAAACGATGCGTTTTATGATGAAAAAGGAGAAATTAGAGAATTTTTAGACGGGAG TTTGGGGGTGGATAAATATGAGATTAAAAATTCAAGCGCCCAAGAAAAATGCCTGTATGAAAATTTCATGCAAGTGGATA GCGAGATTGAAAAAGGCACGATTGAAGAATCTAACGACACTAAAATCATTGTTTTTGGCAAGCTCCCTAAGGTTAAAATC CCAGTAGGGTTGAATCAAACTTATAGCCCTGATTTTGGGTATGTGGTTGAAAACAACGATAAAAAAGTGTTGTTAGTGGT AGAAACTAAGGGGGTTGAACATGAAAACGAATTGCGCGATGAAGAAAAGCGCAAAATTTCAACCGCTAAGAAATTTTTTG AAGCTTTAAAAAAGCAAGGCGTGAACATTGAATACCAAACCAAGTTGAATAATAAGCAATTAAGCGCGTTGATCAATGAA GTTTTAAATCGTAAAGATTAG
Upstream 100 bases:
>100_bases ATATGCCAGCTATCAGTAACGACAGGCTGTGTTTGGAATTGGGCAGTAATTTGTTGGATTTGAAATTAGAGAGCGGCGAT TTAAAGATTAGGGGGTAGAG
Downstream 100 bases:
>100_bases AGTTAATAAGCTCAATTACTCTAATGTTTCACATGGAACAATTTTAAAGAAAAGCGTTTTATTTAAAATTCATGGCGCTT TTGTTATAATCGTTTTTATC
Product: type III R-M system restriction enzyme
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 966; Mature: 966
Protein sequence:
>966_residues MKIKFKRLDYQEQCRDQILGVFKGIDLREPENDAQRISNPVFEIEAIKDLLLENIENLRSKQKITQGSMGIDKSLNCDIL METGTGKTFCFLECVYALHQNYRLSKFIVLTPSNAIKLGVLKSVGITREFFKSEYSTHLESYEDIERFILASNHKCCVLV MTFSAFNKEKNTINQSCLENTNLFNGAKSYMQALANMRPIVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYNNL IYALDSKKAFDCALVKSISVASVGESDECFLELKGIEKKEAAINYTNLENKTQSVKVKEHDNLGVVTQISALEDYIVEKI TKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLF EKLYQQKLEEVLKKPLDENYRAYLERTKDAIYKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQWALQE GWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISEHSLIK QVFSAEELEKSGVVKKGYYGVLLETLEGLGFGEKTGDENFKLTLNQNEFLKKEPELERLKDEKYLDFEKLKDFLKDRLVG HFRVMNKNERKTEKIKINKENFKKFETLWDGLNHQARIAYAIDSESLIDEIVKNINSSFKVSSKIVSVTTHKKVETMGNN AKTEIFERESACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQESLKHLEDLFLEIIYQNIKDKISYQM RETTIKNRKNDAFYDEKGEIREFLDGSLGVDKYEIKNSSAQEKCLYENFMQVDSEIEKGTIEESNDTKIIVFGKLPKVKI PVGLNQTYSPDFGYVVENNDKKVLLVVETKGVEHENELRDEEKRKISTAKKFFEALKKQGVNIEYQTKLNNKQLSALINE VLNRKD
Sequences:
>Translated_966_residues MKIKFKRLDYQEQCRDQILGVFKGIDLREPENDAQRISNPVFEIEAIKDLLLENIENLRSKQKITQGSMGIDKSLNCDIL METGTGKTFCFLECVYALHQNYRLSKFIVLTPSNAIKLGVLKSVGITREFFKSEYSTHLESYEDIERFILASNHKCCVLV MTFSAFNKEKNTINQSCLENTNLFNGAKSYMQALANMRPIVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYNNL IYALDSKKAFDCALVKSISVASVGESDECFLELKGIEKKEAAINYTNLENKTQSVKVKEHDNLGVVTQISALEDYIVEKI TKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLF EKLYQQKLEEVLKKPLDENYRAYLERTKDAIYKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQWALQE GWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISEHSLIK QVFSAEELEKSGVVKKGYYGVLLETLEGLGFGEKTGDENFKLTLNQNEFLKKEPELERLKDEKYLDFEKLKDFLKDRLVG HFRVMNKNERKTEKIKINKENFKKFETLWDGLNHQARIAYAIDSESLIDEIVKNINSSFKVSSKIVSVTTHKKVETMGNN AKTEIFERESACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQESLKHLEDLFLEIIYQNIKDKISYQM RETTIKNRKNDAFYDEKGEIREFLDGSLGVDKYEIKNSSAQEKCLYENFMQVDSEIEKGTIEESNDTKIIVFGKLPKVKI PVGLNQTYSPDFGYVVENNDKKVLLVVETKGVEHENELRDEEKRKISTAKKFFEALKKQGVNIEYQTKLNNKQLSALINE VLNRKD >Mature_966_residues MKIKFKRLDYQEQCRDQILGVFKGIDLREPENDAQRISNPVFEIEAIKDLLLENIENLRSKQKITQGSMGIDKSLNCDIL METGTGKTFCFLECVYALHQNYRLSKFIVLTPSNAIKLGVLKSVGITREFFKSEYSTHLESYEDIERFILASNHKCCVLV MTFSAFNKEKNTINQSCLENTNLFNGAKSYMQALANMRPIVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYNNL IYALDSKKAFDCALVKSISVASVGESDECFLELKGIEKKEAAINYTNLENKTQSVKVKEHDNLGVVTQISALEDYIVEKI TKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSHFEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLF EKLYQQKLEEVLKKPLDENYRAYLERTKDAIYKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQWALQE GWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQVEGDFVGAIQQEISEHSLIK QVFSAEELEKSGVVKKGYYGVLLETLEGLGFGEKTGDENFKLTLNQNEFLKKEPELERLKDEKYLDFEKLKDFLKDRLVG HFRVMNKNERKTEKIKINKENFKKFETLWDGLNHQARIAYAIDSESLIDEIVKNINSSFKVSSKIVSVTTHKKVETMGNN AKTEIFERESACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQESLKHLEDLFLEIIYQNIKDKISYQM RETTIKNRKNDAFYDEKGEIREFLDGSLGVDKYEIKNSSAQEKCLYENFMQVDSEIEKGTIEESNDTKIIVFGKLPKVKI PVGLNQTYSPDFGYVVENNDKKVLLVVETKGVEHENELRDEEKRKISTAKKFFEALKKQGVNIEYQTKLNNKQLSALINE VLNRKD
Specific function: This protein cuts the DNA outside of the recognition site. May also act as a helicase involved in unwinding DNA at the cleavage site. Protein only required for restriction but needs the presence of the modification enzyme [H]
COG id: COG3587
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VRR-NUC domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006935 - InterPro: IPR014883 [H]
Pfam domain/function: PF04851 ResIII; PF08774 VRR_NUC [H]
EC number: =3.1.21.5 [H]
Molecular weight: Translated: 111275; Mature: 111275
Theoretical pI: Translated: 6.49; Mature: 6.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKFKRLDYQEQCRDQILGVFKGIDLREPENDAQRISNPVFEIEAIKDLLLENIENLRS CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH KQKITQGSMGIDKSLNCDILMETGTGKTFCFLECVYALHQNYRLSKFIVLTPSNAIKLGV HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHH LKSVGITREFFKSEYSTHLESYEDIERFILASNHKCCVLVMTFSAFNKEKNTINQSCLEN HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCHHHHHHHHHHHC TNLFNGAKSYMQALANMRPIVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYNNL CCCHHHHHHHHHHHHCCCCEEEECCCHHHHCHHHHHHHHHHHHEEEEEECCEECCCCCCE IYALDSKKAFDCALVKSISVASVGESDECFLELKGIEKKEAAINYTNLENKTQSVKVKEH EEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHEEEECCCCCCCCEEEEEEC DNLGVVTQISALEDYIVEKITKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSH CCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCHHHHHHHHHHHHH FEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLFEKLYQQKLEEVLKKPLDENY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH RAYLERTKDAIYKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQWALQE HHHHHHHHHHHEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQ CCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCHHHHCCEEEEEEC VEGDFVGAIQQEISEHSLIKQVFSAEELEKSGVVKKGYYGVLLETLEGLGFGEKTGDENF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCE KLTLNQNEFLKKEPELERLKDEKYLDFEKLKDFLKDRLVGHFRVMNKNERKTEKIKINKE EEEECCCHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH NFKKFETLWDGLNHQARIAYAIDSESLIDEIVKNINSSFKVSSKIVSVTTHKKVETMGNN HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEHHHEEEEHHHHHHHHCCCC AKTEIFERESACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQESLKHL CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH EDLFLEIIYQNIKDKISYQMRETTIKNRKNDAFYDEKGEIREFLDGSLGVDKYEIKNSSA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCCH QEKCLYENFMQVDSEIEKGTIEESNDTKIIVFGKLPKVKIPVGLNQTYSPDFGYVVENND HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCEEEECCC KKVLLVVETKGVEHENELRDEEKRKISTAKKFFEALKKQGVNIEYQTKLNNKQLSALINE CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH VLNRKD HHCCCC >Mature Secondary Structure MKIKFKRLDYQEQCRDQILGVFKGIDLREPENDAQRISNPVFEIEAIKDLLLENIENLRS CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH KQKITQGSMGIDKSLNCDILMETGTGKTFCFLECVYALHQNYRLSKFIVLTPSNAIKLGV HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEHH LKSVGITREFFKSEYSTHLESYEDIERFILASNHKCCVLVMTFSAFNKEKNTINQSCLEN HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCHHHHHHHHHHHC TNLFNGAKSYMQALANMRPIVIMDEPHRFLGDKTKKYLEQLNALITLRFGATFKDDYNNL CCCHHHHHHHHHHHHCCCCEEEECCCHHHHCHHHHHHHHHHHHEEEEEECCEECCCCCCE IYALDSKKAFDCALVKSISVASVGESDECFLELKGIEKKEAAINYTNLENKTQSVKVKEH EEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHEEEECCCCCCCCEEEEEEC DNLGVVTQISALEDYIVEKITKTEIRFLNGFNLLLDQKEPFSHLLEGEQEVMLKEAIKSH CCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCHHHHHHHHHHHHH FEREEGLFKKGIKALCMVFISGVNSYLSENEKPAKLALLFEKLYQQKLEEVLKKPLDENY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH RAYLERTKDAIYKVHGGYFAKSKKESDEAQVIALILKEKEKLLSFDSDLRFIFSQWALQE HHHHHHHHHHHEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GWDNPNVMTICKLAPSHSNITKLQQIGRGLRLAVNDKGERITKEHADFDFVNELVVIVPQ CCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCHHHHCCEEEEEEC VEGDFVGAIQQEISEHSLIKQVFSAEELEKSGVVKKGYYGVLLETLEGLGFGEKTGDENF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCE KLTLNQNEFLKKEPELERLKDEKYLDFEKLKDFLKDRLVGHFRVMNKNERKTEKIKINKE EEEECCCHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH NFKKFETLWDGLNHQARIAYAIDSESLIDEIVKNINSSFKVSSKIVSVTTHKKVETMGNN HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEHHHEEEEHHHHHHHHCCCC AKTEIFERESACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQESLKHL CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH EDLFLEIIYQNIKDKISYQMRETTIKNRKNDAFYDEKGEIREFLDGSLGVDKYEIKNSSA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCCH QEKCLYENFMQVDSEIEKGTIEESNDTKIIVFGKLPKVKIPVGLNQTYSPDFGYVVENND HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCEEEECCC KKVLLVVETKGVEHENELRDEEKRKISTAKKFFEALKKQGVNIEYQTKLNNKQLSALINE CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH VLNRKD HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10217496; 1587478 [H]