Click here to switch to the map view.

The map label for this gene is clpX [H]

Identifier: 108563745

GI number: 108563745

Start: 1368012

End: 1368422

Strand: Reverse

Name: clpX [H]

Synonym: HPAG1_1320

Alternate gene names: 108563745

Gene position: 1368422-1368012 (Counterclockwise)

Preceding gene: 108563746

Following gene: 108563744

Centisome position: 85.72

GC content: 39.66

Gene sequence:

>411_bases
ATGAACGAAACGCTTTATTGCAGTTTTTGCAAAAAACCAGAATCCAGAGATCCCAAAAAACGCCGCATTATTTTTGCGAG
CAACCTGAATAAAGATGTGTGCGTGTGCGAATATTGTATAGATGTGATGCATGGGGAATTGCACAAATACGACAGAATGG
ATTCTTTATTCGCGCTCAAAAGAGACCGATTGAGAAGAATGGAATCTAGCGCTTATGAAGAAGAGTTTTTGCTCTCTCGC
ATTCCAGCCCCTAAAGAGCTTAAGGCGGTTTTAGACAATTATGTGATAGGCCAAGAGCAGGCTAAAAAGGTTTTTTCCGT
AGCCGTGTATAACCATTACAAACGCTTATCTTTTAAAGAAAAACTCAAAAACAAGACAACCAAGACAGCAATGTGGAGTT
GGAACATTTAG

Upstream 100 bases:

>100_bases
CCTTTTGTGAAAGAGATTTGCTCTTTTATTTTAGAGAGTTCTAGGGGCGTGGCGTATAAGTCAAGCGAATATTCTAGCGA
AGAAAAACAAGAGGAATAAC

Downstream 100 bases:

>100_bases
AAGAAGTGGAGTTGAGCAAGTCTAATATTTTACTGATCGGCCCTACAGGATCGGGCAAAACTCTAATGGCGCAAACTCTG
GCCAAGCATTTGGATATTCC

Product: ATP-dependent protease ATPase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MNETLYCSFCKKPESRDPKKRRIIFASNLNKDVCVCEYCIDVMHGELHKYDRMDSLFALKRDRLRRMESSAYEEEFLLSR
IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKNKTTKTAMWSWNI

Sequences:

>Translated_136_residues
MNETLYCSFCKKPESRDPKKRRIIFASNLNKDVCVCEYCIDVMHGELHKYDRMDSLFALKRDRLRRMESSAYEEEFLLSR
IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKNKTTKTAMWSWNI
>Mature_136_residues
MNETLYCSFCKKPESRDPKKRRIIFASNLNKDVCVCEYCIDVMHGELHKYDRMDSLFALKRDRLRRMESSAYEEEFLLSR
IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKNKTTKTAMWSWNI

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Escherichia coli, GI1786642, Length=112, Percent_Identity=38.3928571428571, Blast_Score=72, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6319704, Length=44, Percent_Identity=63.6363636363636, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 16197; Mature: 16197

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETLYCSFCKKPESRDPKKRRIIFASNLNKDVCVCEYCIDVMHGELHKYDRMDSLFALK
CCCCEEECCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDRLRRMESSAYEEEFLLSRIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KLKNKTTKTAMWSWNI
HHCCCCHHHEEEECCC
>Mature Secondary Structure
MNETLYCSFCKKPESRDPKKRRIIFASNLNKDVCVCEYCIDVMHGELHKYDRMDSLFALK
CCCCEEECCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDRLRRMESSAYEEEFLLSRIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KLKNKTTKTAMWSWNI
HHCCCCHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]