| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563691
Identifier: 108563691
GI number: 108563691
Start: 1313536
End: 1314624
Strand: Direct
Name: 108563691
Synonym: HPAG1_1266
Alternate gene names: NA
Gene position: 1313536-1314624 (Clockwise)
Preceding gene: 108563661
Following gene: 108563692
Centisome position: 82.28
GC content: 38.02
Gene sequence:
>1089_bases ATGCCCCTTTCTTGCTTGCACCCTTTTGGGCCTTTTGAAACCCCTAAAGAGCCAGCTTTAAACAACCCGCTTTTAAAGGC GCCTTCAAGCGATAAAATCTGTCTTTTAGGGCCAATGAAATCCGGTAAAACCACTTTCGCCCTCAAACTAGCAAAGGTTT TTAAAAACCCTGCGTATATCAATTACAATGACATGCGTTTGAACCAAAACATTCTAAACTCGTGGCTTTTAAAATGGCAT TTAGAAAAGAAAATGGATTTGCTCATTTTAGATCATATTGAGCGCTTGGATTTCAGCCTGCCTAAACTTCCCAAAATTAT TCTTATCCCTAGTTGTTTAAGCCCCATAACAGCGCCCGATTTTAGTTTATGCTATGCGTTAGGGTTGAATTTTAAAGAAT ACACTCGCTTTTTCAAACCCAACACCCCTAAAAACACCCTGTTTAACCGCTTTTTAAGAGACGGCAACGCTTTAGACTCG CTTTTTACAGAAAACGAGCAAGAAAAAATCCTAAAAAAACAAGAAAATATTCAATTAATCTTTCAAGCTTACGCCCCCTT AATGGCTAAAATCTGCTCGTATCAATCTAAGTTTGTGAGCGCTTTTTATCTTTATACGCAACTCAAAAAAGAGCTTAAGA TCTCTAAAGACACCCTTTATAAATTGCTACACGCGCTAGAAAAACAACGCATCCTTTTTTTAGTCCCTAGTTTTGAAAAT CATAAAACCAAATTGTATCTGTGCGATTTTGCCTTGCCTTATAGTCTAACTCCCAGCCCCTCGCTTTTAAACGTTTTTGA AAACATGGTTTTTTTAGAGCTTTACAAGCAATTCCCAAACCATGAGCTTTACTCCCATGATAATGGGATTTTTATCTTGC GCGAAAATTCCACCAACAAGCTCGCCCTCATCGCCCACGCTTTCCCCACGCCCCATTTTTTAGAAAAGCAGCTTTTATGG TGCCATAAACATGGGTTTTTAAACATTATAGTCGTTTCTATCAACGCCCCTATTTTGGCAACCAATACCCCCTACAAACA CCTCAATTTCATTGATTTTTCTTTGGATATTCAATCTATTTTGATATAA
Upstream 100 bases:
>100_bases ATTTTTAGGGCTTTTTAGAGTTTTTTACTTCCTTTTTATAAGGAAATATAAAAAAACGCGCTACGATTATCTTAATTCAA TCTCATTTGAAAGGAAGTTT
Downstream 100 bases:
>100_bases TAGTTATTATGTATTTATGTATTTATGTATTTATGTATTTATGTATTTATGTATTTATGTATTTATGTATTTATGTATTT ATGTATTTATGTATTTATGT
Product: hypothetical protein
Products: NA
Alternate protein names: Helix-Turn-Helix Containsing Protein
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MPLSCLHPFGPFETPKEPALNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNPAYINYNDMRLNQNILNSWLLKWH LEKKMDLLILDHIERLDFSLPKLPKIILIPSCLSPITAPDFSLCYALGLNFKEYTRFFKPNTPKNTLFNRFLRDGNALDS LFTENEQEKILKKQENIQLIFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKISKDTLYKLLHALEKQRILFLVPSFEN HKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNHELYSHDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLW CHKHGFLNIIVVSINAPILATNTPYKHLNFIDFSLDIQSILI
Sequences:
>Translated_362_residues MPLSCLHPFGPFETPKEPALNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNPAYINYNDMRLNQNILNSWLLKWH LEKKMDLLILDHIERLDFSLPKLPKIILIPSCLSPITAPDFSLCYALGLNFKEYTRFFKPNTPKNTLFNRFLRDGNALDS LFTENEQEKILKKQENIQLIFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKISKDTLYKLLHALEKQRILFLVPSFEN HKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNHELYSHDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLW CHKHGFLNIIVVSINAPILATNTPYKHLNFIDFSLDIQSILI >Mature_361_residues PLSCLHPFGPFETPKEPALNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNPAYINYNDMRLNQNILNSWLLKWHL EKKMDLLILDHIERLDFSLPKLPKIILIPSCLSPITAPDFSLCYALGLNFKEYTRFFKPNTPKNTLFNRFLRDGNALDSL FTENEQEKILKKQENIQLIFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKISKDTLYKLLHALEKQRILFLVPSFENH KTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNHELYSHDNGIFILRENSTNKLALIAHAFPTPHFLEKQLLWC HKHGFLNIIVVSINAPILATNTPYKHLNFIDFSLDIQSILI
Specific function: Unknown
COG id: COG1373
COG function: function code R; Predicted ATPase (AAA+ superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41943; Mature: 41812
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSCLHPFGPFETPKEPALNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNPAYI CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE NYNDMRLNQNILNSWLLKWHLEKKMDLLILDHIERLDFSLPKLPKIILIPSCLSPITAPD ECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC FSLCYALGLNFKEYTRFFKPNTPKNTLFNRFLRDGNALDSLFTENEQEKILKKQENIQLI HHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCHHHH FQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKISKDTLYKLLHALEKQRILFLVPSFEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCC HKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNHELYSHDNGIFILRENSTNK CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCE LALIAHAFPTPHFLEKQLLWCHKHGFLNIIVVSINAPILATNTPYKHLNFIDFSLDIQSI EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCEEEEEEEECHHHH LI CC >Mature Secondary Structure PLSCLHPFGPFETPKEPALNNPLLKAPSSDKICLLGPMKSGKTTFALKLAKVFKNPAYI CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE NYNDMRLNQNILNSWLLKWHLEKKMDLLILDHIERLDFSLPKLPKIILIPSCLSPITAPD ECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC FSLCYALGLNFKEYTRFFKPNTPKNTLFNRFLRDGNALDSLFTENEQEKILKKQENIQLI HHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCHHHH FQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKISKDTLYKLLHALEKQRILFLVPSFEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCC HKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNHELYSHDNGIFILRENSTNK CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCE LALIAHAFPTPHFLEKQLLWCHKHGFLNIIVVSINAPILATNTPYKHLNFIDFSLDIQSI EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCEEEEEEEECHHHH LI CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA