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The map label for this gene is cmoB [H]

Identifier: 108563400

GI number: 108563400

Start: 1024950

End: 1025735

Strand: Reverse

Name: cmoB [H]

Synonym: HPAG1_0975

Alternate gene names: 108563400

Gene position: 1025735-1024950 (Counterclockwise)

Preceding gene: 108563401

Following gene: 108563399

Centisome position: 64.25

GC content: 37.53

Gene sequence:

>786_bases
ATGCTCACTTGTAACGATAAAATTAATCCAAAAACCCTTTTAGAAGAAATCATGGCGTTAAGGCCATGGCGTAAAGGCCC
TTTTGAAATTTCTCAAATCAAGATTGATAGCGAATGGGATAGCTCCATTAAATGGGATCTAGTCAAAAACGCCACTCTTT
TAAAAGATAAGGTTGTGGCTGATGTGGGTTGCAATAACGGCTATTACTTGTTTAAAATGCTAGAACATGGGCCTAAAAGT
TTGGTGGGGTTTGATCCGGGCGTTTTAGTCAAAAAACAATTTGAATTTTTAGCCCCCTTTTTTGATAAAGAAAAAAAAAT
CATTTATGAGTCTTTGGGGGTAGAGGATTTGCATGAAAAATACCCTAACGCTTTTGATGTCATTTTTTGTTTAGGGGTGT
TATACCACAGAAAAAGCCCGCTAGAGGCTTTAAAAGCCTTGTATCATGCTTTAAAGATAAAAGGGGAGTTGGTGTTGGAT
ACCTTAATCATTGATTCGCCCTTAGACATCGCCCTTTGCCCTAAAAAAACTTATGCTAAAATGAAAAATGTTTATTTTAT
CCCCAGTGTTAGCGCTTTAAAAGGGTGGTGCGAAAGGGTAGGGTTTGAAAATTTTGAGATTCTTAGCGTTTTAAAGACCA
CACCTAAAGAACAGCGTAAAACGGATTTTATTTTGGGGCAGAGTTTGGAAGATTTTTTGGATGAAACAGATCACTCTAAA
ACTTTAGAGGGGTATGACGCTCCTTTGAGGGGGTATTTTAAGATGCTCAAACCAAGCAAGCGTTAA

Upstream 100 bases:

>100_bases
AGCGTTTAATTTCGCTTTTATTTATGGGATTAGCTCTCATCATTTAGAATCCCTTCTAAACCCCCCTTTTTTTAAAAAAA
CCCCCACGCTATGGTAAGTC

Downstream 100 bases:

>100_bases
AATAAAGGATAAGATAGTGCAAGAATCAGTCGTTCGTGTGGATTATGACTCTTTAGAGACTTGTAAGAATTTTAAACCAA
GCGTTGGCACTGAATTGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MLTCNDKINPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATLLKDKVVADVGCNNGYYLFKMLEHGPKS
LVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLD
TLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDETDHSK
TLEGYDAPLRGYFKMLKPSKR

Sequences:

>Translated_261_residues
MLTCNDKINPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATLLKDKVVADVGCNNGYYLFKMLEHGPKS
LVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLD
TLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDETDHSK
TLEGYDAPLRGYFKMLKPSKR
>Mature_261_residues
MLTCNDKINPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATLLKDKVVADVGCNNGYYLFKMLEHGPKS
LVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLD
TLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDETDHSK
TLEGYDAPLRGYFKMLKPSKR

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

Organism=Escherichia coli, GI1788178, Length=249, Percent_Identity=43.7751004016064, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 29991; Mature: 29991

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTCNDKINPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATLLKDKVVA
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEHHHHCCHHHHHHHHH
DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK
CCCCCCCEEEHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHEEHHHCCCCCCEEECCHHHHHH
MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDETDHSK
HHCEEECCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCCC
TLEGYDAPLRGYFKMLKPSKR
CCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MLTCNDKINPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATLLKDKVVA
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEHHHHCCHHHHHHHHH
DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK
CCCCCCCEEEHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
YPNAFDVIFCLGVLYHRKSPLEALKALYHALKIKGELVLDTLIIDSPLDIALCPKKTYAK
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHEEHHHCCCCCCEEECCHHHHHH
MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDETDHSK
HHCEEECCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCCC
TLEGYDAPLRGYFKMLKPSKR
CCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA