| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563357
Identifier: 108563357
GI number: 108563357
Start: 975377
End: 976390
Strand: Reverse
Name: 108563357
Synonym: HPAG1_0932
Alternate gene names: NA
Gene position: 976390-975377 (Counterclockwise)
Preceding gene: 108563358
Following gene: 108563353
Centisome position: 61.16
GC content: 35.4
Gene sequence:
>1014_bases ATGCGTTTTTACATTATCTTTACATTTTTGTTTATTGTGGGTTTTGGCGTGTTTGTTTATAGTATTGATCCGCAAGCTTA CGCCTTTAATTTAGGGAGCTACAGCTTTAATCTTCCCATTGCGGTATGGCTTATGGGTGTTTTGGGCATGTTTGCTTTTT TTTCATGGGTTTTTTTATTCAAACACAATCTCAGCCATAAAATCCGCTTATACCATGAAAAAAGGGATTTTGACAAATTG CTCAAACAAATCCTATCCCAAGACACCCAAAAGACTTTTTTAAAAACGAAATTTAAAAGCGATCTCGCTAAAAACCTCTC TCAAATCTTAGCCCGCTATGATTTAAAGGCTGATTTAAACACGCCAAATAGTGGGTGCGAAAAAGTGGATAACCTTTTTA AGCATTACCACAATATAGAAAATAACACCCTTGAGCCTAAGGATCACGCTAAGCACTCTCTAGCCTATGAGCATGCTTAT TTTTCTAAACGCTTGAAAGCTTTCATCCATAACGATTTAAAAAACGCCTTTGAAGTTTTAACAAACGCGCAAATCCCTTT GGAATTACGCCGCTACGCTTTTATAGAAATCGCCCAAAAAGGCAACAAAAAAGAGGTTTTGAAGGCTTTGAATGCGATGC AAGATAACTTGGATAAAGAGTGCGTGAAATCTTTTTTAAAAGCCTTTTTTGAAAAATCTTTAAACACAGACACTTTAAAA ATTTCAGAGCTTTGCAAAAAGGTGGGTTATGATAAGAACGATTATTTGAAGCTTGCGCAAAAAGCGCAAAAATTTCTTGT CCCCGATCAATGGTTCCAATTTTTTGAGATTTTAAGCCAAGAAGACGATAAGGTGCAAAAAGCCTTTTTATTCGTGTTGT TGGAATTAGAAATGAACGATCTCGCTAAGGAGCATTTAGCGGTTTTATCCTTTGAAGAATACATGCTTTTAAACGCTTAC ATGGATTTGAAACAAGAGCATAAAAAAGCTTATAAATTAGAAGCGTTTTTGTAG
Upstream 100 bases:
>100_bases GACTTTTAGCCATGAAGTGGCTAAAATTGTCTTATGCGAGCAGATCTATAGGGCTTTAAGCATTATTTTTAAGCATCCAT ACCACAAATAGGAGGTGCGC
Downstream 100 bases:
>100_bases GGGGTTTGTTTTGCTTCATGTTTTTAGGGCAGATAGAAATAGATGGTTACAAAAAATTCAAGGAACGGGCTAATGGAGTC GCTCTTAGTGCTAAATAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLFKHNLSHKIRLYHEKRDFDKL LKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLNTPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAY FSKRLKAFIHNDLKNAFEVLTNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQDNLDKECVKSFLKAFFEKSLNTDTLK ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKVQKAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAY MDLKQEHKKAYKLEAFL
Sequences:
>Translated_337_residues MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLFKHNLSHKIRLYHEKRDFDKL LKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLNTPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAY FSKRLKAFIHNDLKNAFEVLTNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQDNLDKECVKSFLKAFFEKSLNTDTLK ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKVQKAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAY MDLKQEHKKAYKLEAFL >Mature_337_residues MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLFKHNLSHKIRLYHEKRDFDKL LKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLNTPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAY FSKRLKAFIHNDLKNAFEVLTNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQDNLDKECVKSFLKAFFEKSLNTDTLK ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKVQKAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAY MDLKQEHKKAYKLEAFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39715; Mature: 39715
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF CCHHHHHHHHHHHHHHHHHEEECCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHH KHNLSHKIRLYHEKRDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQDNLDKECVKSFLKAFFEKSLNTDTLK HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKVQKAFLFVLLELEMND HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF CCHHHHHHHHHHHHHHHHHEEECCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHH KHNLSHKIRLYHEKRDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQDNLDKECVKSFLKAFFEKSLNTDTLK HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKVQKAFLFVLLELEMND HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA