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The map label for this gene is yccA [C]

Identifier: 108563326

GI number: 108563326

Start: 943729

End: 944421

Strand: Reverse

Name: yccA [C]

Synonym: HPAG1_0901

Alternate gene names: 108563326

Gene position: 944421-943729 (Counterclockwise)

Preceding gene: 108563330

Following gene: 108563325

Centisome position: 59.16

GC content: 40.12

Gene sequence:

>693_bases
ATGGCATTGTATGACAGAGCTAATTCTCATAATGCGTATGCAGAAAATTCTTTATTGCATGAAAGCGAGCTAGTAAGTTT
TGTTAAAACGACTTACAAGTTCTTTGCAGGCAGTTTGTTACTAGCGACTATTGGGGCGTTATTGGGTTTAATGAATTTTC
AAGCCGTAGTGCAGTATAAATGGGTGTTTTTCATCGCTGAAATTGCGGCGCTTTTTGGTTTGATGTTTTCTAAATCCAAA
CCCGGATTGAATCTATTCATGCTGTTTGCTTTCACTTCATTATCAGGGGTTACCCTAGTGCCTTTACTAGGTATGGTGAT
TGCAAAAGCTGGTTTAGGAGCGGTTTGGCAAGCTTTGGGCATGACGACTATTGTCTTTGGTTTGATGAGCGTGTATGCCC
TTAAAACCAAAAACGACTTAGCGAATATGGGTAAAATGCTCTTTATCGCTTTGATTGTGGTGTTGGTGTGTTCGCTCATT
AACTTGTTTTTGGGTAGCCCCATGTTCCAGGTTGTCATTGCGGGAGCGAGTGCGATTTTATTCAGTCTTTACATCGCTTA
TGACACCCAAAACATCGTTAAAGGCATGTATGATAGCCCCATTGATGCGGCGGTGGACTTGTATTTAGACTTTTTGAATG
TCTTCATTTCTATCTTGCAAATCATTGGTATTTTTTCAGACAGAGACAAATAG

Upstream 100 bases:

>100_bases
GGGTTTTGTTTGGTATTTTACTACATTTTGCGCTATTATATTGGACCTAGCTGTAGGGTTAATTAAAATTATTTATTGAG
TTGAATTCAAGGAGTAAAAC

Downstream 100 bases:

>100_bases
TTTGAAAAAATAGGGGGGGAAGCCACGCAAAAACCTAATAAAAAATATTTTAAAACTAATAACGCTTCATTTTATATTCT
TTCTTTAAGGATTGGTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MALYDRANSHNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAALFGLMFSKSK
PGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLI
NLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVDLYLDFLNVFISILQIIGIFSDRDK

Sequences:

>Translated_230_residues
MALYDRANSHNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAALFGLMFSKSK
PGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLI
NLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVDLYLDFLNVFISILQIIGIFSDRDK
>Mature_229_residues
ALYDRANSHNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAALFGLMFSKSKP
GLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLIN
LFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVDLYLDFLNVFISILQIIGIFSDRDK

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Homo sapiens, GI116812579, Length=208, Percent_Identity=28.3653846153846, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI118200356, Length=245, Percent_Identity=26.9387755102041, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787205, Length=170, Percent_Identity=35.2941176470588, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787004, Length=160, Percent_Identity=31.25, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24646768, Length=176, Percent_Identity=31.25, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24653221, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653223, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653227, Length=134, Percent_Identity=35.8208955223881, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45551091, Length=134, Percent_Identity=35.8208955223881, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17647735, Length=134, Percent_Identity=35.8208955223881, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653225, Length=134, Percent_Identity=35.8208955223881, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19922136, Length=241, Percent_Identity=31.9502074688797, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24653219, Length=153, Percent_Identity=37.2549019607843, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 25123; Mature: 24992

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYDRANSHNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVFFIAEIAALFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHH
MTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLINLFLGSPMFQVVIAGASAIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FSLYIAYDTQNIVKGMYDSPIDAAVDLYLDFLNVFISILQIIGIFSDRDK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALYDRANSHNAYAENSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVFFIAEIAALFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHH
MTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLINLFLGSPMFQVVIAGASAIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FSLYIAYDTQNIVKGMYDSPIDAAVDLYLDFLNVFISILQIIGIFSDRDK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]