| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is bhuA [H]
Identifier: 108563323
GI number: 108563323
Start: 937238
End: 939679
Strand: Reverse
Name: bhuA [H]
Synonym: HPAG1_0898
Alternate gene names: 108563323
Gene position: 939679-937238 (Counterclockwise)
Preceding gene: 108563324
Following gene: 108563322
Centisome position: 58.86
GC content: 41.97
Gene sequence:
>2442_bases ATGAATGACAAGCGTTTTAGGAAGTATTGTAGTTTTTCTCTTTTTTTGTCCTTATTAGGCATGTTTGAATTGGAGGCTAA AGAAGAAGAAAAAGAAGAAAGAAAGACAGAAAGAAAAAAGGATAAAAAAAAGAACGCCCAACACACTCTAGGCAAAGTTA CCACTCAAGCGGCTAAAATCTTTAATTACAACAACCAGACAACCATTTCAAGTAAGGAATTAGAAAGAAGGCAAGCCAAC CAAATCAGCGACATGTTTAGAAGAAACCCTAATATCAATGTGGGCGGAGGCGCGGTTATAGCGCAAAAAATTTACGTGCG CGGTATTGAAGACAGATTGGCTCGGGTTACGGTGGATGGCGCGGCGCAAATGGGTGCAAGCTATGGGCATCAAGGCAATA CGATTATTGACCCTGGAATGCTCAAAAGCGTGGTGGTTACTAAGGGGGCGGCTCAAGCGAGCGCTGGGCCTATGGCTTTG ATTGGCGCGATCAAAATGGAAACTAAAAGCGCGAGCGATTTTATCCCTAAAGGTAAAGACTACGCCATAAGTGGGGCTGC CACTTTTTTAACCAACTTTGGGGACAGGGAAACCATTATGGGCGCTTATCGTAACCATCATTTTGATGCGCTTTTGTATT ACACGCACCAAAATATTTTTTATTATCGTGATGGGGATAATGCGATGAAAAATCTTTTTGACCCTAAAGCAAATAATAAA GTTACAGGGAGTCCTAGCGAGCAAAACAATGTGATGGCTAAAATCAATGGTTATTTGAGCGAAAGGGATATTTTAACGCT CAGTTATAACATGACCAGAGATAACGCTAACCGCCCTTTAAGAGCGAATTTTACAGGCACTTTTTTACCCTATTCTTGCG GTGATTTTAACGCTTTCCCTAACGAGAAAAACCCTAGCGATTGTTTGTTTGAAAATGACGCTAGTTTGTTTAAAACTTAT AGCGTCAATTTGGTGCATAATGTGAGTTTGAATTATGAAAGAGAAGGGGGGAGCCGTTTTGGTGATCCTAAATTAAAAAT CAATGGCTATACAAGCATTAGGAATGTCCAAATTGATCCGCTTTTTAAGCCTAATGATATAGCGGCTATCATTCCTTTCA CCCCAAACCCAAAACTTAGCGAAGAAAATGAATGCGTGGCACAAGGGGGTATTTATGACGCTCTTAAACAAACTTGCTCC ATCACTTTTAAAAGCCTTGGAGGGGGTTCTGTGGTGGCTAATAAAAATTTATTCATCATCAATTCCGGGTTTAATGCGAA TGTGATCCACACCATAGATCATAAGAATGACAATCTTTTGGAATACGGATTGAATTACCAAAACTTAACCACTTTTGATA AAGCGATCCCTAATAGCGAATTAGTCAAACCCGGCGATGCCCCTGACGCATGCTTAAGGGTTACAAGCCCTAATGATCCC AACATGAATGGGCGTTGCCAAAGGAATGGCGCTACTGCGAATGTGGTTGGGGTGTATGCGCAAGCGAATTACACCTTGCA TCCTATGGTAACTTTAGGGGCAGGGACTCGTTATGATGTCTATACTTTAGTGGATAAAGATTGGCAATTGCACATAACTC AAGGGTTTAGCCCTAGCGCGGCTTTAAATGTCTCGCCTTTAGAAAATTTGAATTTCAGGCTTTCTTACGCGTATGTAACC AGAGGCCCTATGCCTGGAGGTTTGGTGTGGATGCGTCAAGATAATTTGCGCTACAACCGCAATTTAAAGCCAGAAATCGG GCAAAATGTGGAATTTAACACCGAATACAGCAGTCAGTATTTTGATTTCAGAGCCGCCGGTTTTGTCCAATTGATTTCTA ATTACATCAACCAATTTTCTTCAACGCTTTTTGTAACCAACTTGCCCGCGCAAGATATTATTTATGTGCCGGGTTATGAA GTTTCAGGGACGGCTAAATACAAGGGCTTTTCTTTAGGCTTGAGTGTGGCGCGATCATGGCCTTCTTTAAAGGGGCGTTT GATCGCTGATGTGTATGAATTGGCGGCCACGACAGGCAATGTGTTTATTTTAACGGCAAGCTATAAAATCCCACGCACAG GTCTTAGCATCACTTGGCTTTCACGCTTTGTTACGGATTTGAGTTATTGCTCTTATAGCCCTTATCGTAACGGCCCTACG GATATTGACAGACGGCCTAGCAATTGCCCTAAAACGCCCGGGATTTTTCATGTGCATAAGCCGGGTTATGGGGTGAGCAG TTTCTTTATCACTTACAAGCCCACTTACAAAAAACTCAAAGGGTTGAGTCTGAACGCGGTGTTTAACAATGTTTTTAACC AACAATATATTGATCAAGCAAGCCCGGTGATGAGCCCTGATGAACCCAATCAAGACAAATACGCAAGGGGCATGGCAGAG CCTGGCTTTAACGCTAGATTTGAAATTTCTTATAAGTTTTAA
Upstream 100 bases:
>100_bases GTAACCGAGAAAAATCTTTCTCTAAAAATAATACTTTTTTAGTTATAATAACAACTTTGTTTTTTCAAAAACAATAATTA CTATATTTAGGATTTTAAGA
Downstream 100 bases:
>100_bases TAATAAAGCTAAAAAATGAGGATTTCATGGGCAGCGGATCTAATCAAAAATAAAACATTCTTTAGAAGTAACAAATGTAT GATTTTAATCCTTTAATTTT
Product: iron-regulated outer membrane protein
Products: NA
Alternate protein names: Brucella heme uptake protein A [H]
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQAN QISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMAL IGAIKMETKSASDFIPKGKDYAISGAATFLTNFGDRETIMGAYRNHHFDALLYYTHQNIFYYRDGDNAMKNLFDPKANNK VTGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTY SVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFKPNDIAAIIPFTPNPKLSEENECVAQGGIYDALKQTCS ITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTSPNDP NMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVT RGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYE VSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT DIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLKGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAE PGFNARFEISYKF
Sequences:
>Translated_813_residues MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQAN QISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMAL IGAIKMETKSASDFIPKGKDYAISGAATFLTNFGDRETIMGAYRNHHFDALLYYTHQNIFYYRDGDNAMKNLFDPKANNK VTGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTY SVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFKPNDIAAIIPFTPNPKLSEENECVAQGGIYDALKQTCS ITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTSPNDP NMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVT RGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYE VSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT DIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLKGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAE PGFNARFEISYKF >Mature_813_residues MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQAN QISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMAL IGAIKMETKSASDFIPKGKDYAISGAATFLTNFGDRETIMGAYRNHHFDALLYYTHQNIFYYRDGDNAMKNLFDPKANNK VTGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTY SVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFKPNDIAAIIPFTPNPKLSEENECVAQGGIYDALKQTCS ITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTSPNDP NMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVT RGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYE VSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT DIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLKGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAE PGFNARFEISYKF
Specific function: Heme transporter playing an important role in stationary-phase iron acquisition and required for maintenance of chronic infection in mice [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90739; Mature: 90739
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKI CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDG EECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHCHHHHHEEEEECC AAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSASDFIPKGKD HHHHCCCCCCCCCEEECCHHHHHHHEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC YAISGAATFLTNFGDRETIMGAYRNHHFDALLYYTHQNIFYYRDGDNAMKNLFDPKANNK EEECHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEEECEEEEEECCCHHHHHHCCCCCCCC VTGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFP CCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEECCCEEECCCCCCCCCCCC NEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDP CCCCCCCCEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECC LFKPNDIAAIIPFTPNPKLSEENECVAQGGIYDALKQTCSITFKSLGGGSVVANKNLFII CCCCCCEEEEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHEEEECCCCCEEEECCCEEEE NSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTSPNDP ECCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCC NMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSA CCCCEEECCCCEEEEEEEEEECCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCC ALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQY EEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHH FDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSW HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCEEECCCEEECCEEHHHHHHHCC PSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC DIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLKGLSLNAVFNNVFNQQYIDQA CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHC SPVMSPDEPNQDKYARGMAEPGFNARFEISYKF CCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECC >Mature Secondary Structure MNDKRFRKYCSFSLFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKI CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDG EECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHCHHHHHEEEEECC AAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSASDFIPKGKD HHHHCCCCCCCCCEEECCHHHHHHHEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC YAISGAATFLTNFGDRETIMGAYRNHHFDALLYYTHQNIFYYRDGDNAMKNLFDPKANNK EEECHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEEECEEEEEECCCHHHHHHCCCCCCCC VTGSPSEQNNVMAKINGYLSERDILTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFP CCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEECCCEEECCCCCCCCCCCC NEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDP CCCCCCCCEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEEECC LFKPNDIAAIIPFTPNPKLSEENECVAQGGIYDALKQTCSITFKSLGGGSVVANKNLFII CCCCCCEEEEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHEEEECCCCCEEEECCCEEEE NSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTSPNDP ECCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCC NMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSA CCCCEEECCCCEEEEEEEEEECCEEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCC ALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQY EEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHH FDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSW HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCEEECCCEEECCEEHHHHHHHCC PSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLSYCSYSPYRNGPT CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC DIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLKGLSLNAVFNNVFNQQYIDQA CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHC SPVMSPDEPNQDKYARGMAEPGFNARFEISYKF CCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA