| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is vdlC [H]
Identifier: 108563296
GI number: 108563296
Start: 911049
End: 911903
Strand: Reverse
Name: vdlC [H]
Synonym: HPAG1_0871
Alternate gene names: 108563296
Gene position: 911903-911049 (Counterclockwise)
Preceding gene: 108563298
Following gene: 108563295
Centisome position: 57.12
GC content: 42.92
Gene sequence:
>855_bases ATGGGCGTTGGAGAGAAGAAAGAAAGCCAAAAGGTGGCGGTTATCACTGGGGCGAGTTCTGGGATTGGGTTAGAGTGTGC GTTAATGCTGTTAGATCAAGGCTATAAGGTCTATGCGCTTTCTAGGCATGCGACTTTGTGCGTAGCGTTAAACCATGCGT TATGCGAGTGCGTTGATATTGACGTGAGCGATTCTAACGCTTTGAAAGAAGTGTTTTCAAACATCAGCGCTAAAGAAGAT CATTGCGATGTTTTGATCAATTCCGCCGGTTATGGGGTGTTTGGGAGCGCAGAAGACACGCCTATTGAAGAGGTTAAAAA GCAATTTGGCGTGAATTTTTTCGCCCTTTGTGAAGTGGTGCAGTTTTGTTTGCCCTTACTAAAAAACAAGCCCTACTCTA AGATTTTTAATCTTTCTTCCATAGCGGGGCGTGTGAGCATGCTCTTTTTAGGCCATTACAGCGCGAGTAAGCATGCCTTA GAGGCTTATAGCGATGCTTTGCGTTTAGAGCTTAAACCCTTTAACGTTCAAGTGTGTTTGATTGAGCCAGGCCCGGTGAA AAGCAACTGGGAAAAAACCGCTTTTTCAGTTGAGAATTTTGAGAACGAAAACAGCCTTTATGCCTTAGAGGTGGATGCGG CTAAAACTTTTTACGCGAGCGTGTATCAAAAAGCCTTAAACGCTAAAGAAGTGGCGCAAAAAATCGTTTTTCTTAGCATG AGTCAAAAAATCAAGGCTCGCTATTTGATCGGCTTAAAAACCCAATTATTGCTAGCGTTGTATAGAATCCTCCCGAGTAG TTGGTATGATTCTTTGTTCAGATTAATCGTTCTTAAAAGGAAGCGTGATGCTTAA
Upstream 100 bases:
>100_bases TGTAAAAAACATTCCAAGAACTATATATTAGTAAAAATTAAGTAATATTAAGTGAATATTAGAGGAATTATAAAAATAAT AAGAGGGTTAGCGTTAGATA
Downstream 100 bases:
>100_bases AACCTATCATATTGCATTAGCTTGCGTGATTTTAGCGGTGGTGGTGCTGTTGTTTGGAGGGGAGTCCTTGAGTTTGGAAG AATGGCAAGAAGTGTGCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MGVGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCECVDIDVSDSNALKEVFSNISAKED HCDVLINSAGYGVFGSAEDTPIEEVKKQFGVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHAL EAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFENENSLYALEVDAAKTFYASVYQKALNAKEVAQKIVFLSM SQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA
Sequences:
>Translated_284_residues MGVGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCECVDIDVSDSNALKEVFSNISAKED HCDVLINSAGYGVFGSAEDTPIEEVKKQFGVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHAL EAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFENENSLYALEVDAAKTFYASVYQKALNAKEVAQKIVFLSM SQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA >Mature_283_residues GVGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCECVDIDVSDSNALKEVFSNISAKEDH CDVLINSAGYGVFGSAEDTPIEEVKKQFGVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALE AYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFENENSLYALEVDAAKTFYASVYQKALNAKEVAQKIVFLSMS QKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=267, Percent_Identity=29.2134831460674, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=30, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI223718074, Length=275, Percent_Identity=29.4545454545455, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI22507405, Length=282, Percent_Identity=30.4964539007092, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI40548397, Length=187, Percent_Identity=33.1550802139037, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI214010158, Length=187, Percent_Identity=33.1550802139037, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI214010156, Length=187, Percent_Identity=33.1550802139037, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI22758144, Length=187, Percent_Identity=33.1550802139037, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4503817, Length=197, Percent_Identity=27.4111675126904, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI7706318, Length=278, Percent_Identity=25.8992805755396, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI44680136, Length=217, Percent_Identity=27.1889400921659, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI44680133, Length=217, Percent_Identity=27.1889400921659, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI17738292, Length=217, Percent_Identity=27.1889400921659, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI157739938, Length=205, Percent_Identity=27.3170731707317, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI4504503, Length=204, Percent_Identity=28.4313725490196, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI150247226, Length=188, Percent_Identity=32.4468085106383, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI119392083, Length=199, Percent_Identity=28.643216080402, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI19743808, Length=207, Percent_Identity=29.4685990338164, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI1786701, Length=269, Percent_Identity=32.3420074349442, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=25.8620689655172, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786812, Length=195, Percent_Identity=24.6153846153846, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=27.1276595744681, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=27.6679841897233, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17570069, Length=271, Percent_Identity=29.8892988929889, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI71997402, Length=210, Percent_Identity=32.3809523809524, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71994604, Length=241, Percent_Identity=29.4605809128631, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71994600, Length=239, Percent_Identity=29.2887029288703, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17565030, Length=200, Percent_Identity=29.5, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI32563809, Length=290, Percent_Identity=26.551724137931, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17507613, Length=290, Percent_Identity=26.551724137931, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17557780, Length=196, Percent_Identity=29.0816326530612, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17562910, Length=199, Percent_Identity=30.6532663316583, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17538486, Length=200, Percent_Identity=30, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193210355, Length=290, Percent_Identity=25.5172413793103, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=25.6809338521401, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=28.0788177339901, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538480, Length=279, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=29.2307692307692, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193204405, Length=200, Percent_Identity=28, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=29.4416243654822, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI32563807, Length=188, Percent_Identity=29.7872340425532, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI72000259, Length=195, Percent_Identity=30.2564102564103, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17562990, Length=195, Percent_Identity=29.7435897435897, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=31.2820512820513, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6322067, Length=183, Percent_Identity=34.9726775956284, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=27.5510204081633, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=28.0612244897959, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357041, Length=237, Percent_Identity=29.535864978903, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24643142, Length=196, Percent_Identity=33.1632653061224, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28571526, Length=240, Percent_Identity=28.75, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24580925, Length=209, Percent_Identity=29.6650717703349, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=29.4573643410853, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24651139, Length=207, Percent_Identity=27.0531400966184, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355631, Length=284, Percent_Identity=24.6478873239437, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI116007236, Length=194, Percent_Identity=28.3505154639175, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21356301, Length=185, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24644339, Length=238, Percent_Identity=27.3109243697479, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI21355319, Length=210, Percent_Identity=29.5238095238095, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31503; Mature: 31372
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCECVDI CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHEEC DVSDSNALKEVFSNISAKEDHCDVLINSAGYGVFGSAEDTPIEEVKKQFGVNFFALCEVV CCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH QFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCL HHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHEEEEEECEEEEEE IEPGPVKSNWEKTAFSVENFENENSLYALEVDAAKTFYASVYQKALNAKEVAQKIVFLSM ECCCCCCCCCHHHHEEHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHH SQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GVGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCECVDI CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHEEC DVSDSNALKEVFSNISAKEDHCDVLINSAGYGVFGSAEDTPIEEVKKQFGVNFFALCEVV CCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH QFCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCL HHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHEEEEEECEEEEEE IEPGPVKSNWEKTAFSVENFENENSLYALEVDAAKTFYASVYQKALNAKEVAQKIVFLSM ECCCCCCCCCHHHHEEHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHH SQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9139899; 9252185 [H]