| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563114
Identifier: 108563114
GI number: 108563114
Start: 723974
End: 724504
Strand: Direct
Name: 108563114
Synonym: HPAG1_0689
Alternate gene names: NA
Gene position: 723974-724504 (Clockwise)
Preceding gene: 108563113
Following gene: 108563116
Centisome position: 45.35
GC content: 38.98
Gene sequence:
>531_bases ATGGTAGCTCTTATAAAATCATTGATGTTCTTAATGGATAAGGATGGTGATTTTATCAATTGCAGATTGTTTATCGTTAA GGAATTAGGGGTTGATGAGTGTTTAGGGTTTTATGCGCCCCCTGTGATTGATAATGACAACACCGCTCTTGCTGATTTGC TTGAAAATGACGAGCCTACAACATATTATGAAGCTAATTCTGCGAATATCAGGCGTTTTTTGGACAGAGGGCCTTACAAC ATTGAGTGGTTGGTGAGAAAGTATTTGGGGGTTGGGTTTAGGAGTTGCAAAATAGAGCGGATACGAGGAACAGAATTTGC AATCAAATTCCGTTATAAAAAGTGGGGATCTATGATTGGTAGAGAAGTTAAAATGCAATTCCCCAAATATCTTAAAAACT CAAAGAGAGAAGCCGTTAAGATAACAAGCAAGGTGTTTTACGAGTTGTCAAAAGGGCCCCTGTTTGGCAATCTCCTCGGC AAAGATCCCATTTGGGCGATTCTCATGCGGAAGGAAAACAATAATAAATAA
Upstream 100 bases:
>100_bases TGCAACCAGATAAGTTTAATAAGTTTTAGTGATCACGCTATAATTTCATGGAGTTATTAAAGGCTGATAAGGAACCACAG AAACCTAACTCGTTCTATTA
Downstream 100 bases:
>100_bases AATCTTGTTGGGTTTTAATCTTCTTATTTTTTTAAATTAAAGGTCATTTTTTAACCCCTAAGACCGCGCTACAAAAATTA TCATGCAATTAAAATCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MVALIKSLMFLMDKDGDFINCRLFIVKELGVDECLGFYAPPVIDNDNTALADLLENDEPTTYYEANSANIRRFLDRGPYN IEWLVRKYLGVGFRSCKIERIRGTEFAIKFRYKKWGSMIGREVKMQFPKYLKNSKREAVKITSKVFYELSKGPLFGNLLG KDPIWAILMRKENNNK
Sequences:
>Translated_176_residues MVALIKSLMFLMDKDGDFINCRLFIVKELGVDECLGFYAPPVIDNDNTALADLLENDEPTTYYEANSANIRRFLDRGPYN IEWLVRKYLGVGFRSCKIERIRGTEFAIKFRYKKWGSMIGREVKMQFPKYLKNSKREAVKITSKVFYELSKGPLFGNLLG KDPIWAILMRKENNNK >Mature_176_residues MVALIKSLMFLMDKDGDFINCRLFIVKELGVDECLGFYAPPVIDNDNTALADLLENDEPTTYYEANSANIRRFLDRGPYN IEWLVRKYLGVGFRSCKIERIRGTEFAIKFRYKKWGSMIGREVKMQFPKYLKNSKREAVKITSKVFYELSKGPLFGNLLG KDPIWAILMRKENNNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20496; Mature: 20496
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVALIKSLMFLMDKDGDFINCRLFIVKELGVDECLGFYAPPVIDNDNTALADLLENDEPT CHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHCCCCEECCCCHHHHHHHCCCCCC TYYEANSANIRRFLDRGPYNIEWLVRKYLGVGFRSCKIERIRGTEFAIKFRYKKWGSMIG EEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEHHHHHHHHH REVKMQFPKYLKNSKREAVKITSKVFYELSKGPLFGNLLGKDPIWAILMRKENNNK HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCC >Mature Secondary Structure MVALIKSLMFLMDKDGDFINCRLFIVKELGVDECLGFYAPPVIDNDNTALADLLENDEPT CHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHCCCCEECCCCHHHHHHHCCCCCC TYYEANSANIRRFLDRGPYNIEWLVRKYLGVGFRSCKIERIRGTEFAIKFRYKKWGSMIG EEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEHHHHHHHHH REVKMQFPKYLKNSKREAVKITSKVFYELSKGPLFGNLLGKDPIWAILMRKENNNK HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA