Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

Click here to switch to the map view.

The map label for this gene is 108563020

Identifier: 108563020

GI number: 108563020

Start: 621287

End: 621619

Strand: Reverse

Name: 108563020

Synonym: HPAG1_0595

Alternate gene names: NA

Gene position: 621619-621287 (Counterclockwise)

Preceding gene: 108563021

Following gene: 108563019

Centisome position: 38.94

GC content: 38.44

Gene sequence:

>333_bases
ATGGAACACCATAAAGCGCACACAACCATTCAAGCTTTACAAGCCAAACGCAAAAAATTGCTAACCGAATTAGCTGAGTT
GGAAGCAGAAATAAAAGTGAGCAACGAACGAAGGAGCAGTTTTAACATTTCGCTCTCGCCCAGTTTGTTAGCTGAAATAG
AAGAGATAGAATACGAAGAAAAAACAAGTAAAGAGCGAAGAATCAATCACAGCGTTTTGCTCTCGCCTAGTTTTATGGCT
AAAGTGGATGAATACATGAAAGAGAAAGGTTTTCCTAATCGCTCGCTTCTCTTTGAAAAAGCGTTGGAATTTTACATGTT
AAAACACCCATAA

Upstream 100 bases:

>100_bases
ATTCTAAAGAAAAATTCCAATTTTCATTCTTAATGAATTTACTCACAAGATCCTATTTTATAGTAGAATGCGAAAAATAA
AGATATTTTAAGGAACAATA

Downstream 100 bases:

>100_bases
ACCAATAACGGACAAAAAATGAGAGGGTATTTAGGGTTTTGAGAATGGAAAATCAAAGACTCCGTTCCTTTGGTTTTTTA
AGGTTATTGATCTTTTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MEHHKAHTTIQALQAKRKKLLTELAELEAEIKVSNERRSSFNISLSPSLLAEIEEIEYEEKTSKERRINHSVLLSPSFMA
KVDEYMKEKGFPNRSLLFEKALEFYMLKHP

Sequences:

>Translated_110_residues
MEHHKAHTTIQALQAKRKKLLTELAELEAEIKVSNERRSSFNISLSPSLLAEIEEIEYEEKTSKERRINHSVLLSPSFMA
KVDEYMKEKGFPNRSLLFEKALEFYMLKHP
>Mature_110_residues
MEHHKAHTTIQALQAKRKKLLTELAELEAEIKVSNERRSSFNISLSPSLLAEIEEIEYEEKTSKERRINHSVLLSPSFMA
KVDEYMKEKGFPNRSLLFEKALEFYMLKHP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12889; Mature: 12889

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHHKAHTTIQALQAKRKKLLTELAELEAEIKVSNERRSSFNISLSPSLLAEIEEIEYEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHH
KTSKERRINHSVLLSPSFMAKVDEYMKEKGFPNRSLLFEKALEFYMLKHP
HHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEHHKAHTTIQALQAKRKKLLTELAELEAEIKVSNERRSSFNISLSPSLLAEIEEIEYEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHH
KTSKERRINHSVLLSPSFMAKVDEYMKEKGFPNRSLLFEKALEFYMLKHP
HHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA