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The map label for this gene is yohD [H]

Identifier: 108562975

GI number: 108562975

Start: 569458

End: 570036

Strand: Reverse

Name: yohD [H]

Synonym: HPAG1_0550

Alternate gene names: 108562975

Gene position: 570036-569458 (Counterclockwise)

Preceding gene: 108562976

Following gene: 108562974

Centisome position: 35.71

GC content: 40.93

Gene sequence:

>579_bases
TTGGAAGAATACATCATTGACTTATGGAATCAGCATGCAGCGACTTGGGGGTATCTCATTTTATTTGGGTGGAGTATTTT
AGAAGGCGAAATTGGGTTGATTTTAGCAGGGATTGCCAGCTATACCGGTCATATGCATTTAGGGTTAGCCATTTTAGTCG
CAGGGATTGGGGGTTTTGTGGGGGATCAGATCTATTTTTACATCGGCCGCACCAATAAAGCTTACATCCAAAAAAAGCTA
GAAAAACAACGCCGAAAACTAGCCCTAGCCCATTTATTGTTGCAAAAACATGGCTGGTTTATCATTTTTATCCAACGCTA
CATGTATGGCATGCGCACCATCATTCCCATTAGTATAGGGCTCACGCGTTATAGCGCTTTAAAATTCGCTATCATCAACC
TCATTAGCGCGATGGTGTGGGCGAGCATTACCATTATTCTAGCGTGGTATTTAGGAGAAGAATTATTGCATGCGTTAGGG
TGGCTTAAAAAACACCCTTATGCGCTAATATTACTATTAGTATCTTTCTTAGCGTTGGTTCTATGGTATTTCCAATACTA
TAGTAAGAAAAACCGCTAG

Upstream 100 bases:

>100_bases
CATGCTTTTTGATAGGGTTAAAAGAATTACCGGGTATCCAACTTTTAGAAGAACGAGTGAAAACCTTTTGTTTGTTAGAG
TGCTAGGATAAGGGTGAATT

Downstream 100 bases:

>100_bases
AGTGCAATACAATTCTTGAAAGATATGAAATTAAAAAAGGAGACTTTATGTTAAAAATCAAATTAGAAAAAACCACTTTT
GAAAACGCGAAAGCTGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MEEYIIDLWNQHAATWGYLILFGWSILEGEIGLILAGIASYTGHMHLGLAILVAGIGGFVGDQIYFYIGRTNKAYIQKKL
EKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIGLTRYSALKFAIINLISAMVWASITIILAWYLGEELLHALG
WLKKHPYALILLLVSFLALVLWYFQYYSKKNR

Sequences:

>Translated_192_residues
MEEYIIDLWNQHAATWGYLILFGWSILEGEIGLILAGIASYTGHMHLGLAILVAGIGGFVGDQIYFYIGRTNKAYIQKKL
EKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIGLTRYSALKFAIINLISAMVWASITIILAWYLGEELLHALG
WLKKHPYALILLLVSFLALVLWYFQYYSKKNR
>Mature_192_residues
MEEYIIDLWNQHAATWGYLILFGWSILEGEIGLILAGIASYTGHMHLGLAILVAGIGGFVGDQIYFYIGRTNKAYIQKKL
EKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIGLTRYSALKFAIINLISAMVWASITIILAWYLGEELLHALG
WLKKHPYALILLLVSFLALVLWYFQYYSKKNR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=163, Percent_Identity=30.6748466257669, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22198; Mature: 22198

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEYIIDLWNQHAATWGYLILFGWSILEGEIGLILAGIASYTGHMHLGLAILVAGIGGFV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GDQIYFYIGRTNKAYIQKKLEKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIG
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHH
LTRYSALKFAIINLISAMVWASITIILAWYLGEELLHALGWLKKHPYALILLLVSFLALV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
LWYFQYYSKKNR
HHHHHHHHCCCC
>Mature Secondary Structure
MEEYIIDLWNQHAATWGYLILFGWSILEGEIGLILAGIASYTGHMHLGLAILVAGIGGFV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GDQIYFYIGRTNKAYIQKKLEKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIG
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHH
LTRYSALKFAIINLISAMVWASITIILAWYLGEELLHALGWLKKHPYALILLLVSFLALV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
LWYFQYYSKKNR
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]