| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is virD4 [H]
Identifier: 108562924
GI number: 108562924
Start: 516241
End: 518487
Strand: Reverse
Name: virD4 [H]
Synonym: HPAG1_0499
Alternate gene names: 108562924
Gene position: 518487-516241 (Counterclockwise)
Preceding gene: 108562925
Following gene: 108562918
Centisome position: 32.48
GC content: 37.61
Gene sequence:
>2247_bases ATGGAAGACTTTTTATATAACACCTTATATTTCATAGAGGATTATAAGTTGGTTGTTATTTTTAGTTTCATAGGGTTAAT AGCGTTATTTTTTCTTTACAAATTCATAAAAGCTCAAAAAAAGACTTTTAAAGATAAAGCTAACCAACCTCAAAAGAAAA AAAGCTTTAAAGAAATCATTATAGATGGGCTGAAAGAAAGAGTTAAAACCTTTGGCTTTTGGTTACAAGCTATACTATTA CTATCCTATTCTTTTATCACATCAGGGTTATTTTTCTTAATTCTCTTAGGTAATTTTTATGATGATAATAGATTGCCTGA GAGTGATGATGATCTTTTTGATATATGGATCTATGCGATACAAGATTTTCCTAATTACTATTTTAAGGCGCTTTGTTTTA GTTCACTCAAAATTTATGGGTTCAATATATCCTTAGTCGTATATAGTTCTATTTTATGCTCTTATATCTTCATTACCTTT TTTGTGTGGTTCTTAAAATACTTAACTCGGACTAGGGACATAGGAGCGAATAAAAAAGTTGATGATCTCTTTGGTAGCGC GAGTTGGGAAACTGAAGAGAAAATGATCAAAGCCAAGCTCATCACGCCCAACAATAAAAAACGCGCCTTTGACAAACGAG AGGTGATTGTAGGTAGGCGTGGCTTGGGGGATTTTATCGCTTACGCAGGGCAGGCGTTCATTGGCTTGATTGCTCCTACT AGAAGCGGTAAAGGTGTGGGTTTCATCATGCCCAATATGATCAATTATCCTCAAAATATCGTTGTGTTTGACCCTAAGGC TGACACTATGGAAACTTGCGGAAAAATCAGAGAAAAACGCTTCAACCAAAAAGTGTTCATCTATGAACCTTTCTCCTTAA AAACACACCGATTTAATCCTTTCGCTTATGTGGATTTTGGTAATGATGTGGTTTTGACTGAAGACATACTCTCTCAAATT GACACACGCCTAAAAGGGCATGGCATGGTGGCTAGTGGAGGGGATTTTTCCACTCAAATCTTTGGATTGGCAAAGCTCGT GTTCCCTGAAAGACCTAATGAAAAAGATCCTTTTTTTAGCAATCAGGCGCGAAACCTTTTTGTCATCAATTGCAATATTT ACAGGGATCTCATGTGGACTAAAAAGGGGCTTGAGTTTGTCAAAAGAAAAAAAATCATCATGCCTGAAACCCCTACGATG TTTTTCATAGGTTCTATGGCAAGCGGGATCAACTTGATTGATGAAGACACAAACATGGAAAAAGTCGTGTCTTTAATGGA ATTTTTTGGAGGTGAAGAAGATAAGAGTGGCGATAATCTAAGAGCACTTAGTCCTGCCACTAGAAACATGTGGAATAACT TTAAGACAATGGGTGGCGCTAGAGAAACTTATAGCTCGGTTCAAGGGGTATATACTTCAGCCTTTGCACCTTATAATAAC GCCATGATTAGAAATTTCACGAGTGCTAATGATTTTGATTTCAGGCGTTTAAGGATCGATGCAGTGAGTATTGGTGTGAT CGCTAATCCTAAAGAAAGCACTATTGTTGGACCGATATTAGAGCTGTTTTTTAACGTGATGATTTATAGCAATTTGATTC TACCAATCCATGACCCACAATGCAAAAGAAGTTGCTTGATGCTCATGGATGAATTTACGCTCTGTGGCTATTTAGAGACC TTTGTTAAAGCGGTAGGAATTATGGCAGAATACAACATGCGCCCTGCGTTTGTGTTTCAAAGTAAGGCGCAACTAGAGAA TGACCCCCCACTTGGTTATGGTAGGAATGGGGCTAAAACTATTTTAGACAACCTTTCTTTGAATATGTATTATGGAATCA ACAACGATAACTATTATGAACATTTTGAAAAACTTTCTAAGGTGTTAGGGAAATACACAAGGCAAGATGTGAGCCGAAGC ATTGATGACAATACAGGTAAGACCAACACTTCTATCAGCAACAAAGAGCGGTTTTTGATGACCCCTGATGAATTGATGAC TATGGGCGATGAGCTTATCATTCTAGAGAATACGCTCAAACCCATCAAATGCCACAAGGCGCTTTACTATGATGATCCAT TCTTCACCGATGAACTCATTAAGGTGAGTCCAAGCTTGAGCAAGAAATACAAATTGGGGAAAGTGCCTAATCAAGCAACA TTCTATGATGATTTGCAAGCCGCTAAAACCAGAGGTGAATTGAGCTATGATAAATCTTTAGTGCCTGTGGGTTCAAGCGA ACTGTGA
Upstream 100 bases:
>100_bases GTCTCATTGAGGGCTTTAAAGATTTGATTGATATGATTGTTCATATCAACCACCACAAACAGTGTGATGAATTTTATATC AAACATAGGTAGCAGGCACA
Downstream 100 bases:
>100_bases TTAAGACAAGATATCTTAACAAAAAGAAAATTAAAAGATAATAATGTAAATGATATTATTATAAATTCATAAAATAATAG AAGTGCGTCATCAAGATTAC
Product: cag pathogenicity island protein 5
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKTFKDKANQPQKKKSFKEIIIDGLKERVKTFGFWLQAILL LSYSFITSGLFFLILLGNFYDDNRLPESDDDLFDIWIYAIQDFPNYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITF FVWFLKYLTRTRDIGANKKVDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQI DTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTM FFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGARETYSSVQGVYTSAFAPYNN AMIRNFTSANDFDFRRLRIDAVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLET FVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRS IDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT FYDDLQAAKTRGELSYDKSLVPVGSSEL
Sequences:
>Translated_748_residues MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKTFKDKANQPQKKKSFKEIIIDGLKERVKTFGFWLQAILL LSYSFITSGLFFLILLGNFYDDNRLPESDDDLFDIWIYAIQDFPNYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITF FVWFLKYLTRTRDIGANKKVDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQI DTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTM FFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGARETYSSVQGVYTSAFAPYNN AMIRNFTSANDFDFRRLRIDAVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLET FVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRS IDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT FYDDLQAAKTRGELSYDKSLVPVGSSEL >Mature_748_residues MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKTFKDKANQPQKKKSFKEIIIDGLKERVKTFGFWLQAILL LSYSFITSGLFFLILLGNFYDDNRLPESDDDLFDIWIYAIQDFPNYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITF FVWFLKYLTRTRDIGANKKVDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQI DTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTM FFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGARETYSSVQGVYTSAFAPYNN AMIRNFTSANDFDFRRLRIDAVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLET FVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRS IDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT FYDDLQAAKTRGELSYDKSLVPVGSSEL
Specific function: Unknown
COG id: COG3505
COG function: function code U; Type IV secretory pathway, VirD4 components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the virD4/traG family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003688 [H]
Pfam domain/function: PF02534 TraG [H]
EC number: NA
Molecular weight: Translated: 85852; Mature: 85852
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKTFKDKANQPQKKKSFKEII CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH IDGLKERVKTFGFWLQAILLLSYSFITSGLFFLILLGNFYDDNRLPESDDDLFDIWIYAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH QDFPNYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITFFVWFLKYLTRTRDIGANKKV HHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH DDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT HHHHCCCCCCHHHHHHEEEEECCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHEEEEEEC RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNP CCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECCCC FAYVDFGNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFS EEEEECCCCEEEHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC NQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTMFFIGSMASGINLIDEDTNME CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHCCCEEECCCCCHH KVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGARETYSSVQGVYTSAFAPYNN HHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC AMIRNFTSANDFDFRRLRIDAVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQ HHHCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEECCCCH CKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCHHHH ILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGKTNTSISNKERFLM HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE TPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT CCHHHHHCCCCEEEEECCCCCHHHHHEEEECCCCCCHHHHHCCCCHHHCEECCCCCCCCH FYDDLQAAKTRGELSYDKSLVPVGSSEL HHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKTFKDKANQPQKKKSFKEII CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH IDGLKERVKTFGFWLQAILLLSYSFITSGLFFLILLGNFYDDNRLPESDDDLFDIWIYAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH QDFPNYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITFFVWFLKYLTRTRDIGANKKV HHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH DDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT HHHHCCCCCCHHHHHHEEEEECCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHEEEEEEC RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNP CCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECCCC FAYVDFGNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFS EEEEECCCCEEEHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC NQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTMFFIGSMASGINLIDEDTNME CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHCCCEEECCCCCHH KVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGARETYSSVQGVYTSAFAPYNN HHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC AMIRNFTSANDFDFRRLRIDAVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQ HHHCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEECCCCH CKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCHHHH ILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGKTNTSISNKERFLM HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE TPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT CCHHHHHCCCCEEEEECCCCCHHHHHEEEECCCCCCHHHHHCCCCHHHCEECCCCCCCCH FYDDLQAAKTRGELSYDKSLVPVGSSEL HHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3658701; 2822660 [H]