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The map label for this gene is ybgC [C]

Identifier: 108562897

GI number: 108562897

Start: 487824

End: 488225

Strand: Reverse

Name: ybgC [C]

Synonym: HPAG1_0472

Alternate gene names: 108562897

Gene position: 488225-487824 (Counterclockwise)

Preceding gene: 108562911

Following gene: 108562896

Centisome position: 30.58

GC content: 39.55

Gene sequence:

>402_bases
ATGCGCTGTAGGGTATATTACGAAGATACCGACTCTGAAGGCGTGGTCTATCATGCGAATTATTTGAAATATTGCGAAAG
GGCTAGGAGCGAGTTTTTTTTTAAACAGAATGTCTTGCCAGAAAATGAAGAAGGCGTGTTTGTTATCCGCTCTATCAAAG
CGGATTTTTTCACCCCCGCAAGCCTTGGGCAGGTCTTAGAAATAAGAACGCAAATTAAAGAATTAAGGAAGGTTTTTGTG
GTGCTTTTTCAAGAAATTTATTGTATCCAAAACGCTTCTTTAGAGCCTATGAAGCCTTTTAAAGTCTTTGCTTCAGAAAT
CAAGTTTGGCTTTGTCAATCGCTCTACATACAGCCCTATTGCCATTCCTAAATTGTTTAAGGAGCTGTTCAATGCCGTCT
GA

Upstream 100 bases:

>100_bases
TACCTAATAAAATATAGAGCAACGCCCTTAGATTATACTATAGTTAAGTTACATATTGTATAATTTTAAGAAAATTTCAT
TATTTGAGTAAGGGGAATTA

Downstream 100 bases:

>100_bases
TTTAGAAAAACCCACCATTATTTACCCTTGCCTTTGGGATTATAGGGTGATTATGACCACTAAAGATGAAAGCGCGTTAA
AAGAGCTTTTAGAAACCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKVFV
VLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPIAIPKLFKELFNAV

Sequences:

>Translated_133_residues
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKVFV
VLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPIAIPKLFKELFNAV
>Mature_133_residues
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKVFV
VLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPIAIPKLFKELFNAV

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=126, Percent_Identity=37.3015873015873, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15616; Mature: 15616

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
CCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
AIPKLFKELFNAV
HHHHHHHHHHHCC
>Mature Secondary Structure
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPA
CCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
SLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
AIPKLFKELFNAV
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]