| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562866
Identifier: 108562866
GI number: 108562866
Start: 453340
End: 455235
Strand: Reverse
Name: 108562866
Synonym: HPAG1_0441
Alternate gene names: NA
Gene position: 455235-453340 (Counterclockwise)
Preceding gene: 108562867
Following gene: 108562865
Centisome position: 28.52
GC content: 36.39
Gene sequence:
>1896_bases ATGCCCTTTTTAAAAGCCCTAGAATCTTTTGATGTGCCCTATTTAGAAAAAGAAATTTCAAAGCGTTTTAGGGATAATTT AGTTTTTTTCAAATCCTATCACCCCAATCTTTTTAACGCTCTCAATACGCCTTTTAAAAATTACCAATTGCTTTTTGAAA AAAATCATCTTAATCTCTTACACACGCCCACGAACGCTTTAAGCTACCCTAAAAATCAAATGATAGAAACCGCTTTCAAC ATGGCTTCTAACCCATTGAATAATCCCAGATACTCATTAGACAATAACCACCTCTCTTTACATTATTTAAAATCTCAAAA CAACCCCAAACTCCCCCTAACCCTTAAAGCCACGCATGCGATCTCAAACTTTTTAGACAATTATCAAACGCCTTGCTCTT TAAAGAAATTCTTACCCCCTACCATGATTTATGGCGTCTTAGACGGCTTGTTTTTGGCTATTTTACAGGCTCAAAATTAC CGCTTCCATTCGCTTTATTTGTTTGAAGAAAATTTAGATTTGTTTAAAATCAGCTGTTATTTTGCGCGTTATGAAGATTT GATCACAAAAGGGGCTAAACTCTTTATTCAAGGGTTTTTTAACCCCAATGAATTAAAAATGGATTTTTTGAAACGCCCCA TCACGCATTCTTTTTTAAAGCTAGAAATCATGCCCTATAAAAGCGCTTTTAATTCGTGCATGCGAGAAAACATTCAAAGC TATTACAAACAAGCCTTAAGGGGTTGGGGGAGTTTTGAAGATGAATTACTGGGATTAAAAAACACGCTTAAAAACTTACC CTTATACCAAACTCTAAAGATTAAACCTAAAAAGATTAACGCCCCCATTTGCGTGGTGGGTAATGGGCCAAGCCTGGATT TGTTGCTAGATTTTTTAAAAGAAAATGAAGATAATTTCATCATTTTTTCATGCGGAACCGCTTTAAAGCCTTTAAAAACG CATGGCGTTAAAGTGGATTTTCAAATAGAAGTGGAGCGCATAGACTATCTTAAAGAGGTTTTAGAAAAAGCCCCCCTAGA AGACACCCCCTTAATGGGAGCGAACATGCTCAATCCTAACGCTTTTAATTTAGCCAAAGAAGCGTTAATGTTTATGCGTG GGGGGAGCGCTTGCGCGTATATAAGCCCTTTAAGTGTAGAATACGCAGCGCCTTTTGTGGGCAATGCCGGGGTGGCTTTA GCGGGTTTGATGAGCGATGAAATTTATTTGTGCGCTTTAGATTGCGCTTATATTAAAGGGTTTAAAAAGCACGCTCAAAA TTCCTATTATGAAAATGAAAAAGAAATTGACACTTCGTCTTTAATCAGCATAGAGAGCAATTTTAAAGGCTATGAAACTT TTAGCGACTCGCTCTTTTTGCTCTCTAAAGAAAGGATTGAAGAAGCCCTTTATTATTACCAGCCTAAAAAAGTCTATAAT CTAAGCTATGGGGCGAAAATCAAGCATGCTGTTAGCCTCAATCGCTCTCAAGTAAAATTGAAACATTCCAACAAACAAGA AGCTATCGCTCGCATTAAAAGCATGTTTAGCCCTAGAAGTAATCATGCTAAGGATTTAAACAATTTACAAAAAAATCTGA TTCGTTTTAAAGAGGATTTTTTCACGCAATTAAACACGCCCTGTAAAACCAAGCAAGAAATATTTGAATGGGTGGATAGT TTGAGTGGGTTTTGCCAAACAATTAGCGCTAAAACCCCCACTATAGGCATTTTATTTGAAGGGAGTATCGCTCATATTTT ACAAAGCGTTCTAATCGTTTCATTGCATCTTAAAGAAAATGAGCTGACGCATTTTATCAAATTCTCTCAAAACGCCTTAA AACAATTCCTTAAAGAAGCCTGTTTATTATTGCAAATGCAACTCAAACAACCATGA
Upstream 100 bases:
>100_bases GAACAAGATTTTATCTCTTTGAAAAAAATCGCCCTCGCTTCCCAACTTTTAGAAAATGATTTAAAAGACTCCTAAGGGGT GTGATGAAAAAGGCCATTAC
Downstream 100 bases:
>100_bases TTTTTATTTTTACATTATAATAACAACCTTAAATCAAAGGGGTGTTTATGCCATACAATGAAACCACAAGGGTTCAAATC CCTGCCTTAATGCATTTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MPFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLLHTPTNALSYPKNQMIETAFN MASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHAISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLKENEDNFIIFSCGTALKPLKT HGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPNAFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL AGLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDFFTQLNTPCKTKQEIFEWVDS LSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKENELTHFIKFSQNALKQFLKEACLLLQMQLKQP
Sequences:
>Translated_631_residues MPFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLLHTPTNALSYPKNQMIETAFN MASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHAISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLKENEDNFIIFSCGTALKPLKT HGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPNAFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL AGLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDFFTQLNTPCKTKQEIFEWVDS LSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKENELTHFIKFSQNALKQFLKEACLLLQMQLKQP >Mature_630_residues PFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLLHTPTNALSYPKNQMIETAFNM ASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHAISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYR FHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQSY YKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLKENEDNFIIFSCGTALKPLKTH GVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPNAFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALA GLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYNL SYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDFFTQLNTPCKTKQEIFEWVDSL SGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKENELTHFIKFSQNALKQFLKEACLLLQMQLKQP
Specific function: Unknown
COG id: COG2604
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72457; Mature: 72326
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLL CCHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEEECCCEEE HTPTNALSYPKNQMIETAFNMASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHA ECCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHH ISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY HHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEHHH FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEEHHHHHHHHHHHHHHH YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLK HHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHH ENEDNFIIFSCGTALKPLKTHGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPN CCCCCEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALAGLMSDEIYLCALDCAYIKG HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHH FKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEE LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDF CCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH FTQLNTPCKTKQEIFEWVDSLSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKEN HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHEECCCH ELTHFIKFSQNALKQFLKEACLLLQMQLKQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLL CHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEEECCCEEE HTPTNALSYPKNQMIETAFNMASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHA ECCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHH ISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY HHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEHHH FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEEHHHHHHHHHHHHHHH YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLK HHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHH ENEDNFIIFSCGTALKPLKTHGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPN CCCCCEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALAGLMSDEIYLCALDCAYIKG HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHH FKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEE LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDF CCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH FTQLNTPCKTKQEIFEWVDSLSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKEN HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHEECCCH ELTHFIKFSQNALKQFLKEACLLLQMQLKQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA