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The map label for this gene is ybgF [H]

Identifier: 108562854

GI number: 108562854

Start: 437890

End: 439332

Strand: Reverse

Name: ybgF [H]

Synonym: HPAG1_0429

Alternate gene names: 108562854

Gene position: 439332-437890 (Counterclockwise)

Preceding gene: 108562855

Following gene: 108562853

Centisome position: 27.52

GC content: 41.51

Gene sequence:

>1443_bases
ATGGACAATCAAGAGATAACGCATCAAAATATCACGCAAAAACAAGGCGAGCTTAAAAGAGACATGAAAATGCGCCATCT
CTTAATGATTGCATTTGGAGGAGCGATCGGCACAGGGCTTTTTGTAGGCACTGGAGGTAATATTGCGAGCGCTGGCCCTT
TAGGGACCTTGATCGCTTATGGTTTTGGAGGGCTTGTGGTTTATTGCATCATGCTCTCTTTAGGCGAATTGGCTAGCGTT
TATCCCACTACGGGAAGTTTTGGGGATTATGCAGCTAAATTCATAGGCCCTGGCACGGGTTATATGGTTTTTTGGATGTA
TTGGCTTGGCTGGGTGATCACGGTGGCGTTAGAATACATCGCTATAGGCATGCTCATGCAACGCTGGTTTGCGGATATTC
CTATCCATTATTGGGTTATTTTATGCATTGCGTTAGTTTTTTTATTGAACTTTTTTTCGGTTAAAATTTTTGCCGAGGGC
GAGTTTTTCTTTAGCCTGATTAAAGTTTTAGCGGTGATCGCTTTTATAGGCATTGGCGCGATTGGGATTATTTATCAAAT
CTATTTGCATGGGTTTAGTTCTATTTTTGATAACTTCCATTTTGGCGATAAAGGGTTTTTCCCTAACGGGAGTGCAGCGG
TTTTTAGCGCGATGCTCGCTGTCATTTTTGCTTTCACTGGCACAGAGGTGATTGGGGTGGCTGTGGGAGAGACTAAAAAC
GCTAGCGAAGTGATGCCCAAAGCGATTAAGGCGACCTTGTGGCGGATTGTCTTTTTCTTTTTAGGCTCTGTGTTTGTCAT
TTCTGTTTTTTTACCCATGAATGATTCTTCTATCACGCAAAGCCCTTTTGTGAGCGTTTTAGAACGCATCCATTTGCCCT
TTATTGGCATGGGTATCCCTTATGTGGCTGATATAATGAACGCTGTTATCATTACAGCAATGTTTTCTACCGCTAATTCA
GGGCTTTATGGAGCGAGCCGCATGATTTATGGGCTGTCCAAACAAAAGATGTTTTTTAAGGTTTTTTCCAAACTCAACCG
ACAAGGCACGCCCACTTATGCGATGCTTTTTTCCCTTTCTTTTTCTCTCATAGGGCTTTTAGTCCAAATTTATGCCAAAG
AAAATGTCGTGGAAGCTTTGATTAATGTGATCAGTTTCACGGTGATTATTGTGTGGGTTAGCGTGTCTGTTTCGCAATAT
TCTTTCCGCAAGCAATACTTAAAAGCCGGGCATTCTTTAGAGGATTTGCCTTATAAAGCCCCCTTTCTACCCTTTTTGCA
ACTCATAGGGATCACTGGATGTGCCATCGGCGTGATTGGTTCGGCTATGGATAAGGATCAACGCATTGGGATGATTTTAA
CGATTGTTTTCGCTGTTATTTGTTACATTGGATACTATTTTACACAAAAAGCTAATGAAAATAACAAAAAAGATTTGATA
TAA

Upstream 100 bases:

>100_bases
TTTTTAAATTTTATTTTCAATATTCAATTAAAAAAAATCATTTTATTTTATTTTTGTTATAATTCAAGCTATTTTTATTT
TCAATCTAAGGAGGTGTCGC

Downstream 100 bases:

>100_bases
TCTCTTTTTAATTTTGAAATTGACATTAATCAAGGAAGTAACCATGATGAAAAAAACCCTTTTTATCTCTTTGGCTTTAG
CGTTAAGCTTGAATGCGGGC

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MDNQEITHQNITQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIASAGPLGTLIAYGFGGLVVYCIMLSLGELASV
YPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVITVALEYIAIGMLMQRWFADIPIHYWVILCIALVFLLNFFSVKIFAEG
EFFFSLIKVLAVIAFIGIGAIGIIYQIYLHGFSSIFDNFHFGDKGFFPNGSAAVFSAMLAVIFAFTGTEVIGVAVGETKN
ASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMNDSSITQSPFVSVLERIHLPFIGMGIPYVADIMNAVIITAMFSTANS
GLYGASRMIYGLSKQKMFFKVFSKLNRQGTPTYAMLFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQY
SFRKQYLKAGHSLEDLPYKAPFLPFLQLIGITGCAIGVIGSAMDKDQRIGMILTIVFAVICYIGYYFTQKANENNKKDLI

Sequences:

>Translated_480_residues
MDNQEITHQNITQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIASAGPLGTLIAYGFGGLVVYCIMLSLGELASV
YPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVITVALEYIAIGMLMQRWFADIPIHYWVILCIALVFLLNFFSVKIFAEG
EFFFSLIKVLAVIAFIGIGAIGIIYQIYLHGFSSIFDNFHFGDKGFFPNGSAAVFSAMLAVIFAFTGTEVIGVAVGETKN
ASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMNDSSITQSPFVSVLERIHLPFIGMGIPYVADIMNAVIITAMFSTANS
GLYGASRMIYGLSKQKMFFKVFSKLNRQGTPTYAMLFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQY
SFRKQYLKAGHSLEDLPYKAPFLPFLQLIGITGCAIGVIGSAMDKDQRIGMILTIVFAVICYIGYYFTQKANENNKKDLI
>Mature_480_residues
MDNQEITHQNITQKQGELKRDMKMRHLLMIAFGGAIGTGLFVGTGGNIASAGPLGTLIAYGFGGLVVYCIMLSLGELASV
YPTTGSFGDYAAKFIGPGTGYMVFWMYWLGWVITVALEYIAIGMLMQRWFADIPIHYWVILCIALVFLLNFFSVKIFAEG
EFFFSLIKVLAVIAFIGIGAIGIIYQIYLHGFSSIFDNFHFGDKGFFPNGSAAVFSAMLAVIFAFTGTEVIGVAVGETKN
ASEVMPKAIKATLWRIVFFFLGSVFVISVFLPMNDSSITQSPFVSVLERIHLPFIGMGIPYVADIMNAVIITAMFSTANS
GLYGASRMIYGLSKQKMFFKVFSKLNRQGTPTYAMLFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSVSQY
SFRKQYLKAGHSLEDLPYKAPFLPFLQLIGITGCAIGVIGSAMDKDQRIGMILTIVFAVICYIGYYFTQKANENNKKDLI

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=469, Percent_Identity=40.724946695096, Blast_Score=391, Evalue=1e-110,
Organism=Escherichia coli, GI1788480, Length=437, Percent_Identity=36.8421052631579, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI1789017, Length=419, Percent_Identity=35.799522673031, Blast_Score=238, Evalue=8e-64,
Organism=Escherichia coli, GI1790653, Length=483, Percent_Identity=29.8136645962733, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI87081915, Length=430, Percent_Identity=33.7209302325581, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1786789, Length=469, Percent_Identity=29.637526652452, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI48994972, Length=451, Percent_Identity=33.4811529933481, Blast_Score=228, Evalue=6e-61,
Organism=Escherichia coli, GI1786302, Length=469, Percent_Identity=31.7697228144989, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1786602, Length=474, Percent_Identity=33.1223628691983, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI87082250, Length=356, Percent_Identity=25.2808988764045, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87082023, Length=473, Percent_Identity=23.6786469344609, Blast_Score=63, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6320772, Length=444, Percent_Identity=33.5585585585586, Blast_Score=248, Evalue=2e-66,
Organism=Saccharomyces cerevisiae, GI6324061, Length=437, Percent_Identity=32.4942791762014, Blast_Score=236, Evalue=8e-63,
Organism=Saccharomyces cerevisiae, GI6324059, Length=444, Percent_Identity=32.4324324324324, Blast_Score=217, Evalue=4e-57,
Organism=Saccharomyces cerevisiae, GI6324553, Length=425, Percent_Identity=32.9411764705882, Blast_Score=215, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6322892, Length=433, Percent_Identity=31.4087759815243, Blast_Score=213, Evalue=5e-56,
Organism=Saccharomyces cerevisiae, GI6319824, Length=426, Percent_Identity=31.4553990610329, Blast_Score=207, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6320717, Length=453, Percent_Identity=28.6975717439294, Blast_Score=203, Evalue=4e-53,
Organism=Saccharomyces cerevisiae, GI6321629, Length=495, Percent_Identity=27.2727272727273, Blast_Score=202, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6322967, Length=444, Percent_Identity=31.3063063063063, Blast_Score=194, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6319543, Length=419, Percent_Identity=28.6396181384248, Blast_Score=191, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6324990, Length=428, Percent_Identity=29.9065420560748, Blast_Score=187, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6319608, Length=445, Percent_Identity=28.0898876404494, Blast_Score=187, Evalue=4e-48,
Organism=Saccharomyces cerevisiae, GI6319542, Length=432, Percent_Identity=30.3240740740741, Blast_Score=177, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6324981, Length=465, Percent_Identity=30.3225806451613, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6320251, Length=433, Percent_Identity=27.0207852193995, Blast_Score=173, Evalue=6e-44,
Organism=Saccharomyces cerevisiae, GI6321053, Length=436, Percent_Identity=25.9174311926606, Blast_Score=169, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6324924, Length=431, Percent_Identity=26.9141531322506, Blast_Score=167, Evalue=3e-42,
Organism=Saccharomyces cerevisiae, GI6320364, Length=512, Percent_Identity=23.828125, Blast_Score=134, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52902; Mature: 52902

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]