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The map label for this gene is ycaJ [C]

Identifier: 108562846

GI number: 108562846

Start: 429319

End: 430494

Strand: Reverse

Name: ycaJ [C]

Synonym: HPAG1_0421

Alternate gene names: 108562846

Gene position: 430494-429319 (Counterclockwise)

Preceding gene: 108562847

Following gene: 108562845

Centisome position: 26.97

GC content: 41.07

Gene sequence:

>1176_bases
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCAACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTCATTTAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTACTTTTGAATTAACCCCCCTAAATAAGAGCGATTTAGACAAGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACTTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Upstream 100 bases:

>100_bases
AATTGCAAGACGCTCTGCAAAAACACTCTAAAAACACCAAAACCCCAACGAAAAATTTAAACACCCCTACGAATTTTTAC
GAATTGATTTTATTTAAAAA

Downstream 100 bases:

>100_bases
TCTTATAAATTACATTAAAATGCGACAATGGTAATAAAAAATCAATATTTTTTGATTGAATTAAAATAATAATGAGTTTT
ATCTATGTTTCATCGCATTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPNAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFTFELTPLNKSDLDKLCDK
ALALLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Sequences:

>Translated_391_residues
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPNAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFTFELTPLNKSDLDKLCDK
ALALLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
>Mature_390_residues
SLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPNAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLK
LKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFTFELTPLNKSDLDKLCDKA
LALLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDE
NASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAYR
AINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=445, Percent_Identity=35.0561797752809, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI18426904, Length=421, Percent_Identity=34.916864608076, Blast_Score=192, Evalue=4e-49,
Organism=Escherichia coli, GI1787119, Length=383, Percent_Identity=31.8537859007833, Blast_Score=211, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI71986063, Length=209, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=34.9056603773585, Blast_Score=225, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6324039, Length=205, Percent_Identity=25.8536585365854, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19921076, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 43755; Mature: 43623

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPNAFFYGPPGVGKTSLAQIIARS
CCCHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHH
LERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL
HCCCCEECCCCCEEHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCHHHHHHHHHCCCCEE
ILGASTQDPNYSLSHAIRSRSFTFELTPLNKSDLDKLCDKALALLKKQIEPDAKTYLLNN
EEECCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
SAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEAR
CCCHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK
HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHCCCCCCCCCCCH
QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPNAFFYGPPGVGKTSLAQIIARS
CCHHHCCCHHHHHHCCCHHCCCCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHH
LERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL
HCCCCEECCCCCEEHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCHHHHHHHHHCCCCEE
ILGASTQDPNYSLSHAIRSRSFTFELTPLNKSDLDKLCDKALALLKKQIEPDAKTYLLNN
EEECCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
SAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEAR
CCCHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK
HHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHCCCCCCCCCCCH
QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]