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The map label for this gene is recJ [H]

Identifier: 108562768

GI number: 108562768

Start: 350961

End: 352511

Strand: Reverse

Name: recJ [H]

Synonym: HPAG1_0343

Alternate gene names: 108562768

Gene position: 352511-350961 (Counterclockwise)

Preceding gene: 108562769

Following gene: 108562767

Centisome position: 22.08

GC content: 40.55

Gene sequence:

>1551_bases
ATGAAACAAAAGCTTAAAGCTCAGATCAAAGAGCGCATGGCTTCTATCGCTTATAATGAAAAAGGGTTTCCTAGCCCCTT
TTTATTTAAAGACTTGAAAAAAGCCGCGCTCAAAATCATAGAAGCCATGCGCGCAAACACAGAAATTTTAGTGGTGGGCG
ATTATGACGCTGACGGCGTGATTAGCTCTGCTATCATGGCAAAATTCTTTGAAAGCCTAAACTATAAGCATGTCCGCATT
GCAATCCCTAATCGCTTCATGGATGGCTATGGGATTTCTAAAAAATTTTTAGAAAAACACCACGCCCCTTTAATCATCAC
GGTGGATAACGGGATTAACGCCTTTGAAGCCGCGCGATTTTGCAAAGAAAAAAATTACACCCTTATCATCACCGATCACC
ATTGCTTAAATAATGATGAAGTCCCAGACGCTTATGCGGTAATCAACCCCAAGCAACCGGATTGTGATTTTATCCAAAAG
GAAGTGTGCGGGGCGTTGGTAGCGTTTTATTTGTGCTATGGAATCCACAAGCTTTTAGGAAAAGAAAAAAGCCATTCTAG
TGAGTTGTTGTGTTTAGCGGGCGTGGCGACTATTGCTGATATGATGCCTTTGACTTTTTTTAACCGCTTTTTAGTTTCTA
AAGCCTTGTATTTTTTGCAAAAAGAATCCTTAGGGGCGATGGGGTTTTTGCGCCAAAGGGAAGTTTTTAGAAAACGCTCT
TTAAAAGCGAGCGATATTTCTTTCAGTATCGCCCCCTTAATCAACTCCGCAGGGCGCATGCAAGATGCGAAAATGGCTTT
AGATTTTTTAAGCGCGAATAATTTTCAAGATGGCTATTCTTTGTATGAACGCTTGAAAGCATGCAATACGAAGCGTAAAA
TGATCCAACAGCAGGTTTTTGAAGAAGCCTTTAAGCATGCGATGGTTGGAGAAAAGATTGTCGTCGCTTTTAAGGATAAT
TGGCATGAGGGCGTGCTGGGGATCGTGGCTTCAAAATTAGTGGAAGCCACCCAAAAGCCAAGCCTGGTTTTTACCTTTAA
AGAAGGGGTGTATAAAGGGAGCGCTCGTAGTTCTCCAAATATTGACTTGATTGACGCTTTGAATGGGGTTTCTTCTTTAT
TACTCGGCTATGGAGGGCATAGGCAAGCGTGCGGGTTGAGCGTTGGAAAAAACAATATCGTCTCGCTCTTTGAAACTTTA
GAAAATTTTGATTTTAAAGTCTTACCTTTTTGTAAAACAGAGCCCCCTTTAACGCTCAAATTAAAAGACATTGACAGAGA
GCTTTTAGAGATTATAGAAATGGGCGAACCTTATGGGCAAGAAAACCCTGAACCCTTATTCCAAGCGCAAAATTTAGAAG
TCATAGAAGAAAAAATCATCAAAGAAAGCCACCAGGTTTTGCGTTTTAAGGATAAAGAATGCGTCAAAGAGGCTATTTAT
TTTAACACTGAGCGGTTTTTGAAAGCGGGCGAAAAGGTGAGCGTGATTTTTAGCGTGGAATTAGATGAGTGTTCTAATGA
GCCTAAAATGTTTGTTAAAAGTTTGTTGTAG

Upstream 100 bases:

>100_bases
GGTGCAATTCCACCCAGAATTCACCTCCAGGTTGCAAAGCCCTAACCCTATTATTTTGGATTTCATTAAGAGCGCTCTTT
CTAAATCCTAATCTAAAAGA

Downstream 100 bases:

>100_bases
TGCCTTTTGTTGAAGAAGAATTTGAAATTTTAAAACCCACCAAAGCCTTGTTTTTTGTGCGCGATGTTTTAAAATGCTCT
TTAAAAGAAGCCCAACGGCA

Product: single-stranded-DNA specific exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MKQKLKAQIKERMASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRI
AIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQK
EVCGALVAFYLCYGIHKLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMVGEKIVVAFKDN
WHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETL
ENFDFKVLPFCKTEPPLTLKLKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSVIFSVELDECSNEPKMFVKSLL

Sequences:

>Translated_516_residues
MKQKLKAQIKERMASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRI
AIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQK
EVCGALVAFYLCYGIHKLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMVGEKIVVAFKDN
WHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETL
ENFDFKVLPFCKTEPPLTLKLKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSVIFSVELDECSNEPKMFVKSLL
>Mature_516_residues
MKQKLKAQIKERMASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRI
AIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQK
EVCGALVAFYLCYGIHKLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVFEEAFKHAMVGEKIVVAFKDN
WHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETL
ENFDFKVLPFCKTEPPLTLKLKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSVIFSVELDECSNEPKMFVKSLL

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=471, Percent_Identity=31.2101910828025, Blast_Score=220, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 58265; Mature: 58265

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKLKAQIKERMASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH
ISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
HHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHH
CKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLG
HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVF
CCCCCCCEEHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHH
EEAFKHAMVGEKIVVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPN
HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCKTEPPLTLK
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEE
LKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
EHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FNTERFLKAGEKVSVIFSVELDECSNEPKMFVKSLL
CCHHHHHHCCCEEEEEEEEEHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MKQKLKAQIKERMASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH
ISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
HHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHH
CKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLG
HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNTKRKMIQQQVF
CCCCCCCEEHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHH
EEAFKHAMVGEKIVVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPN
HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCKTEPPLTLK
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEE
LKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
EHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FNTERFLKAGEKVSVIFSVELDECSNEPKMFVKSLL
CCHHHHHHCCCEEEEEEEEEHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]