| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562689
Identifier: 108562689
GI number: 108562689
Start: 268586
End: 269185
Strand: Direct
Name: 108562689
Synonym: HPAG1_0264
Alternate gene names: NA
Gene position: 268586-269185 (Clockwise)
Preceding gene: 108562686
Following gene: 108562690
Centisome position: 16.82
GC content: 34.17
Gene sequence:
>600_bases TTGATTAAGGTGTTTGAATTGGGTTTAGCTGATGTTATTTTAGAGCGTTTTAAAGATTTTATGAGAGGACAACCTGAGCC TTACAAGTTTTTACAGGTTTTTTATGTGCAAGAAAAAGAACGCTTTTTAAACCATAAAATGAACGAATATATCAAGCAAA ATAAAAGCAAAGAAGAAGCTAGCATTTTGGCCAGACAAGGCTTTGTCAGCACCATAGGAAGGGTGTTAGAAAAAATCATA GAACTTTTATTAAAAGATTTTTGTATTAAAAACAATGTCAAAATGACGAACGATAAAATCTTAAGGGCTAAGCGCATTAA TGGCGAGCTGGATAAGGTCAAACGGGCTTTATGGGTGCATTTTGGAGGATATAGCGTTTTACCTGATGGGGATATTGTTC TTTATCAAACCAACAAGGATAATGTCAAAATCCTAGCGGTTTTATCGGTAAAAAATTCGTTCAGAGAGCGTTTCACAGAA ACGCCTTATTGGAAATTAAAACTCTTACAATCGCCTACAACTTCTCACATTAAAGTCTTTATGATAACACCGGATAATGA TGATGAGATCAGTTTTAAAAACAAACCTAAAAAAGGCTAG
Upstream 100 bases:
>100_bases TAAGCAGAATATCTAAAATTTGCACTTCATTTTTATCATAAGCTTGTTTAAACACCAGCCATTATCAAAAAGTTTTGTAT TATAATTTGATTGATTTCTG
Downstream 100 bases:
>100_bases GATCGTCATGGAGCATGAATGAGATGGCCTCTATTTAGCCAAAAGCCATTTTGATCAAAGCTCTAAAATTAAGGGCATAG AGAATTTATTAGAAGATTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEASILARQGFVSTIGRVLEKII ELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVHFGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTE TPYWKLKLLQSPTTSHIKVFMITPDNDDEISFKNKPKKG
Sequences:
>Translated_199_residues MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEASILARQGFVSTIGRVLEKII ELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVHFGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTE TPYWKLKLLQSPTTSHIKVFMITPDNDDEISFKNKPKKG >Mature_199_residues MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEASILARQGFVSTIGRVLEKII ELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVHFGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTE TPYWKLKLLQSPTTSHIKVFMITPDNDDEISFKNKPKKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1208.1 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23348; Mature: 23348
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEA CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SILARQGFVSTIGRVLEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCHHHHHHHHHHEE FGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTETPYWKLKLLQSPTTSHIKVF ECCEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE MITPDNDDEISFKNKPKKG EEECCCCCCCCCCCCCCCC >Mature Secondary Structure MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEA CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SILARQGFVSTIGRVLEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCHHHHHHHHHHEE FGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTETPYWKLKLLQSPTTSHIKVF ECCEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE MITPDNDDEISFKNKPKKG EEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9252185 [H]