Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108562689

Identifier: 108562689

GI number: 108562689

Start: 268586

End: 269185

Strand: Direct

Name: 108562689

Synonym: HPAG1_0264

Alternate gene names: NA

Gene position: 268586-269185 (Clockwise)

Preceding gene: 108562686

Following gene: 108562690

Centisome position: 16.82

GC content: 34.17

Gene sequence:

>600_bases
TTGATTAAGGTGTTTGAATTGGGTTTAGCTGATGTTATTTTAGAGCGTTTTAAAGATTTTATGAGAGGACAACCTGAGCC
TTACAAGTTTTTACAGGTTTTTTATGTGCAAGAAAAAGAACGCTTTTTAAACCATAAAATGAACGAATATATCAAGCAAA
ATAAAAGCAAAGAAGAAGCTAGCATTTTGGCCAGACAAGGCTTTGTCAGCACCATAGGAAGGGTGTTAGAAAAAATCATA
GAACTTTTATTAAAAGATTTTTGTATTAAAAACAATGTCAAAATGACGAACGATAAAATCTTAAGGGCTAAGCGCATTAA
TGGCGAGCTGGATAAGGTCAAACGGGCTTTATGGGTGCATTTTGGAGGATATAGCGTTTTACCTGATGGGGATATTGTTC
TTTATCAAACCAACAAGGATAATGTCAAAATCCTAGCGGTTTTATCGGTAAAAAATTCGTTCAGAGAGCGTTTCACAGAA
ACGCCTTATTGGAAATTAAAACTCTTACAATCGCCTACAACTTCTCACATTAAAGTCTTTATGATAACACCGGATAATGA
TGATGAGATCAGTTTTAAAAACAAACCTAAAAAAGGCTAG

Upstream 100 bases:

>100_bases
TAAGCAGAATATCTAAAATTTGCACTTCATTTTTATCATAAGCTTGTTTAAACACCAGCCATTATCAAAAAGTTTTGTAT
TATAATTTGATTGATTTCTG

Downstream 100 bases:

>100_bases
GATCGTCATGGAGCATGAATGAGATGGCCTCTATTTAGCCAAAAGCCATTTTGATCAAAGCTCTAAAATTAAGGGCATAG
AGAATTTATTAGAAGATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEASILARQGFVSTIGRVLEKII
ELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVHFGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTE
TPYWKLKLLQSPTTSHIKVFMITPDNDDEISFKNKPKKG

Sequences:

>Translated_199_residues
MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEASILARQGFVSTIGRVLEKII
ELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVHFGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTE
TPYWKLKLLQSPTTSHIKVFMITPDNDDEISFKNKPKKG
>Mature_199_residues
MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEASILARQGFVSTIGRVLEKII
ELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVHFGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTE
TPYWKLKLLQSPTTSHIKVFMITPDNDDEISFKNKPKKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1208.1 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23348; Mature: 23348

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEA
CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SILARQGFVSTIGRVLEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCHHHHHHHHHHEE
FGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTETPYWKLKLLQSPTTSHIKVF
ECCEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE
MITPDNDDEISFKNKPKKG
EEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKVFELGLADVILERFKDFMRGQPEPYKFLQVFYVQEKERFLNHKMNEYIKQNKSKEEA
CEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SILARQGFVSTIGRVLEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDKVKRALWVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHCCCHHHHHHHHHHEE
FGGYSVLPDGDIVLYQTNKDNVKILAVLSVKNSFRERFTETPYWKLKLLQSPTTSHIKVF
ECCEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE
MITPDNDDEISFKNKPKKG
EEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]