| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562669
Identifier: 108562669
GI number: 108562669
Start: 249065
End: 249466
Strand: Reverse
Name: 108562669
Synonym: HPAG1_0244
Alternate gene names: NA
Gene position: 249466-249065 (Counterclockwise)
Preceding gene: 108562670
Following gene: 108562668
Centisome position: 15.63
GC content: 34.83
Gene sequence:
>402_bases GTGGGAATGAATGAGCTTATCCGCTATGGCTTGATATTCCTCTTTTTTTTAAAAGCGTTTGGGCTTGATTATGGGATAGA TAAAACGCTAGAATTAAAAAAAGATGAAGTGTTTAAAGCGATCATCAAAGACACTTCAAATGAACAAACCAAAGAAATCA CGCTCTATTGGACGCTATATGCAAATAAAGGTTTAGTCATCAACATGCGTTTTAACCATTTCCCTTACCAGTTTATTTTA TACACCGATCATGCGAAAAACACCTATAACCTCAAAGTTTTTGAAGAAAAATTTTCTTCTAACAGCACTCTGTCGCTTGT GTTTAAAGATTTTAAAGAAGATAAAGCCGCTTTAAGGCTTTTAGCCCTTATGCCCCTTGTTTTTTCTCCTAAAGAGCCTT AA
Upstream 100 bases:
>100_bases GAATCTTTCGCTAAAGCTTTAAGAATGGATGAAGAGTTGCAACAAAAAATAGAGAGCAGGAAAACAGACATTGTGATCCA ATCCATGGCGAATATTCTCA
Downstream 100 bases:
>100_bases GGAATTTGCATGCAAGAAAAACAACTTAAAACCATTCAAAATAAGATCGCTTCTTGGATCAAAGAAATAGAAAGCGGCTT TATAGATGCATTGTTTTCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MGMNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYANKGLVINMRFNHFPYQFIL YTDHAKNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLALMPLVFSPKEP
Sequences:
>Translated_133_residues MGMNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYANKGLVINMRFNHFPYQFIL YTDHAKNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLALMPLVFSPKEP >Mature_132_residues GMNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYANKGLVINMRFNHFPYQFILY TDHAKNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLALMPLVFSPKEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15640; Mature: 15509
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLY CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCCCCEEEEEEEEEE ANKGLVINMRFNHFPYQFILYTDHAKNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRL ECCCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEHHCCCCCEEEEEEHHHHHHHHHHHH LALMPLVFSPKEP HHHHHHHCCCCCC >Mature Secondary Structure GMNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLY CHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCCCCEEEEEEEEEE ANKGLVINMRFNHFPYQFILYTDHAKNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRL ECCCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEHHCCCCCEEEEEEHHHHHHHHHHHH LALMPLVFSPKEP HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA