| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is mnmG [H]
Identifier: 108562639
GI number: 108562639
Start: 217662
End: 219527
Strand: Reverse
Name: mnmG [H]
Synonym: HPAG1_0214
Alternate gene names: 108562639
Gene position: 219527-217662 (Counterclockwise)
Preceding gene: 108562645
Following gene: 108562638
Centisome position: 13.75
GC content: 42.23
Gene sequence:
>1866_bases GTGGTAAAAGAAAGTGATATTTTAGTGGTTGGTGGGGGGCATGCAGGCATTGAAGCGAGCTTGATTGCGGCTAAAATGGG GGCTAGGGTGCATTTAATCACCATGCTCATAGACACGATCGGTTTAGCGAGCTGTAATCCGGCGATTGGGGGCTTGGGTA AAGGGCATTTGACTAAAGAAGTGGATGTTTTAGGGGGGGCTATGGGGATTATTACGGATAATAGCGGTTTGCAATATCGT GTGTTAAACGCCTCTAAAGGGCCGGCAGTTAGAGGGACTAGAGCGCAAATTGATATGGATACTTACCGCATTTTTGCAAG AAATCTTGTTTTAAACACCCCTAATTTGAGCGTCTCTCAAGAAATGACCGAAAGTTTAATCCTTGAAAACGATGAGGTAG TGGGCGTAACCACGAACATTAACAACACTTATAGAGCTAAAAAAGTGATCATCACCACAGGCACTTTTTTAAAAGGGGTG GTGCATATTGGCGAGCACCAAAACCAAAACGGGCGCTTTGGGGAAAACGCTTCTAATTCTTTAGCCTTGAATTTAAGGGA GCTTGGCTTTAAAGTGGATCGCTTAAAAACCGGCACTTGCCCAAGAGTGGCGGGCAATAGCATTGATTTTGAAGGCTTAG AAGAGCATTTTGGGGACACAAACCCTCCCTATTTCAGCTATAAAACCAAAGATTTTAACCCCACCCAACTCTCATGTTTC ATCACTTACACTAACCCTATTACCCACCAAATCATTAGGGATAATTTCCACCGAGCCCCCCTATTTAGCGGTCAAATTGA AGGCATAGGCCCAAGGTATTGCCCTAGCATTGAAGATAAAATCAACCGCTTTAGCGAGAAAGAACGCCACCAGCTGTTTT TAGAGCCTCAAACCATTCACAAAAGCGAATATTATATCAACGGCTTAAGCACCTCTTTGCCCCTAGATGTGCAAGAAAAG GTCATTCATTCTATCAAAGGCTTAGAAAACGCCCTCATCACGCGCTATGGCTATGCGATAGAATATGATTTTATCCAGCC CACGGAATTGACCCACACTTTAGAAACCAAAAAAATCAAAGGGCTTTATTTGGCCGGGCAAATCAATGGGACTACCGGCT ATGAAGAAGCGGCGGCTCAAGGGCTTATGGCTGGGATTAATGCGGTATTAGCCCTAAAGAATCAAGCCCCCTTTATTTTA AAGCGCAATGAAGCCTATATCGGCGTTTTGATTGATGATCTGGTCACTAAAGGCACGAACGAGCCTTACAGAATGTTTAC CAGCCGAGCCGAATACCGCTTGCTTTTAAGAGAAGACAACACGCTTTTTAGGTTGGGCGAACATGCCTATCGTTTAGGGC TTATGGAGCAGGATTTTTATAAGGAATTGAAAAAAGACCAACAAGCAATACAAGAAAACTTGAAACGCCTTAAAGAATAT GTGCTTACCCCTAGTAAAGAAGTGTTAAAACGCTTGAACGAATTAGATGAAAACCCTATCAATGACAAGGTTGATGGCAT TAGCCTTTTAGCGCGCGATAGTTTTAATGCAGAAAAAATGCGCTCCTTTTTCAGCTTTTTAGCCCCTTTGAATGAGCGGG TTTTAGAACAGATTAAAATTGAATGCAAGTATAATATTTATATTGAAAAGCAACACGAAAATATCGCTAAAATGGATAGC ATGCTCAAAGTGTCTATCCCTAAAGATTTTGTGTTTAAAGGCATTCCAGGCCTTAGCTTAGAAGCGGTAGAAAAATTAGA AAAATTCCGCCCCAAAAGCCTTTTTGAAGCCTCAGAAATCAGCGGGATCACCCCAGCGAATTTAGACGTTTTGCATTTGT ATATTCATTTGCGGAAAAACTCTTAA
Upstream 100 bases:
>100_bases TCCATTTTATTTTACCCTTTAAAATTACTAACCTCCATGCTACAATAAAACTTTTTCAAAACTAAGATTTTAGAAAAATC ATATCAAAATAGGAAAAAGA
Downstream 100 bases:
>100_bases AGGATTGGCATGGACGCTTTAGAAATCACCCAAAAGCTCATCAGCTACCCCACCATTACGCCCAAAGAATGCGGTATTTT TGAATACATTAAATCGCTTT
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 621; Mature: 621
Protein sequence:
>621_residues MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDNSGLQYR VLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV VHIGEHQNQNGRFGENASNSLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFIL KRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEY VLTPSKEVLKRLNELDENPINDKVDGISLLARDSFNAEKMRSFFSFLAPLNERVLEQIKIECKYNIYIEKQHENIAKMDS MLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS
Sequences:
>Translated_621_residues MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDNSGLQYR VLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV VHIGEHQNQNGRFGENASNSLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFIL KRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEY VLTPSKEVLKRLNELDENPINDKVDGISLLARDSFNAEKMRSFFSFLAPLNERVLEQIKIECKYNIYIEKQHENIAKMDS MLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS >Mature_621_residues MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDNSGLQYR VLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV VHIGEHQNQNGRFGENASNSLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFIL KRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEY VLTPSKEVLKRLNELDENPINDKVDGISLLARDSFNAEKMRSFFSFLAPLNERVLEQIKIECKYNIYIEKQHENIAKMDS MLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=628, Percent_Identity=42.9936305732484, Blast_Score=438, Evalue=1e-123, Organism=Homo sapiens, GI19882217, Length=653, Percent_Identity=41.6539050535988, Blast_Score=425, Evalue=1e-119, Organism=Homo sapiens, GI183227703, Length=668, Percent_Identity=40.4191616766467, Blast_Score=419, Evalue=1e-117, Organism=Escherichia coli, GI2367273, Length=612, Percent_Identity=48.3660130718954, Blast_Score=593, Evalue=1e-170, Organism=Caenorhabditis elegans, GI17534255, Length=619, Percent_Identity=39.2568659127625, Blast_Score=420, Evalue=1e-117, Organism=Saccharomyces cerevisiae, GI6321202, Length=623, Percent_Identity=40.1284109149278, Blast_Score=438, Evalue=1e-123, Organism=Drosophila melanogaster, GI24658174, Length=630, Percent_Identity=41.7460317460317, Blast_Score=447, Evalue=1e-126,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 69694; Mature: 69694
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE CCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ HHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHEEECCCCCHHH EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCC LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF EEEEHHHHCCEEEHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEE ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHEEEECCHHHC KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHEEC GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN EEEEEEEECCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEEEEHHHHHHCCCC EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEY CHHHHHHCCCCEEEEEECCCCEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH VLTPSKEVLKRLNELDENPINDKVDGISLLARDSFNAEKMRSFFSFLAPLNERVLEQIKI HCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEE ECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI EEEEEEEEEECCCCHHHHHHHEEEECCHHHHHCCCCCCCHHHHHHHHHCCCHHHCCHHHC SGITPANLDVLHLYIHLRKNS CCCCCCCCEEEEEEEEEECCC >Mature Secondary Structure MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE CCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ HHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHEEECCCCCHHH EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCC LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF EEEEHHHHCCEEEHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEE ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHEEEECCHHHC KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHEEC GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN EEEEEEEECCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEEEEHHHHHHCCCC EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEY CHHHHHHCCCCEEEEEECCCCEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH VLTPSKEVLKRLNELDENPINDKVDGISLLARDSFNAEKMRSFFSFLAPLNERVLEQIKI HCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEE ECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI EEEEEEEEEECCCCHHHHHHHEEEECCHHHHHCCCCCCCHHHHHHHHHCCCHHHCCHHHC SGITPANLDVLHLYIHLRKNS CCCCCCCCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA