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The map label for this gene is trbI [H]

Identifier: 108562464

GI number: 108562464

Start: 40515

End: 41645

Strand: Direct

Name: trbI [H]

Synonym: HPAG1_0039

Alternate gene names: 108562464

Gene position: 40515-41645 (Clockwise)

Preceding gene: 108562463

Following gene: 108562465

Centisome position: 2.54

GC content: 42.71

Gene sequence:

>1131_bases
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCCCTGCAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCTAAAGAAATGAACCACTCTAAAGAAGAAGCTTTTACCAGCCCTCCCATAGATCCAAACAC
AACACCCCCTAAAAAAGACTTTTCTTCAAAGCAATGGGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAAAAAGAC
ATTGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATCAACATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGAGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGTAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGTGATTAG
AGAGGGGAGTAGGGTATTTATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Upstream 100 bases:

>100_bases
ATTGTAGGCGATTACATTATCGCTGAAGACGTTTCTGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCG
TTTTATCAAAAAGGGTAAAG

Downstream 100 bases:

>100_bases
CTCAAAAATCCCCAATTAAAAACGCTATAATAACCCTAAAAAATAAAAGAGAGCCTGACAAGAAAACGCATGAAAATTAA
AAATATCTTACTGAGTGGGG

Product: comB10 competence protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPAESSKDATIKALQEQLKA
ALKALNSKEMNHSKEEAFTSPPIDPNTTPPKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Sequences:

>Translated_376_residues
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPAESSKDATIKALQEQLKA
ALKALNSKEMNHSKEEAFTSPPIDPNTTPPKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
>Mature_376_residues
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPAESSKDATIKALQEQLKA
ALKALNSKEMNHSKEEAFTSPPIDPNTTPPKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 41861; Mature: 41861

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQP
CCCHHCEEHHEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
TPAESSKDATIKALQEQLKAALKALNSKEMNHSKEEAFTSPPIDPNTTPPKKDFSSKQWD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHH
LLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKDIATNENKLLRTITADKMIPA
HHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCCCCCHHEEEHHHHHHCHH
FLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
HHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCEEHEEHHHHH
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNR
CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEHHHHCCC
GNKEGATNFFGDYLLMQLMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDI
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCE
FFPIPRENEVIAEFLK
EEECCCCHHHHHHHHC
>Mature Secondary Structure
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQP
CCCHHCEEHHEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
TPAESSKDATIKALQEQLKAALKALNSKEMNHSKEEAFTSPPIDPNTTPPKKDFSSKQWD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHH
LLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKDIATNENKLLRTITADKMIPA
HHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCCCCCHHEEEHHHHHHCHH
FLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
HHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCEEHEEHHHHH
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNR
CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCEEEEEHHHHCCC
GNKEGATNFFGDYLLMQLMRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDI
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCE
FFPIPRENEVIAEFLK
EEECCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]