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The map label for this gene is clpS [H]

Identifier: 108562455

GI number: 108562455

Start: 33474

End: 33749

Strand: Direct

Name: clpS [H]

Synonym: HPAG1_0030

Alternate gene names: 108562455

Gene position: 33474-33749 (Clockwise)

Preceding gene: 108562454

Following gene: 108562456

Centisome position: 2.1

GC content: 44.93

Gene sequence:

>276_bases
ATGAAAATGTATAACATACCCACCCCCACCATGGCGCAAGTGATCATGGTTGATGACCCCATTACGACAGCGGAATTTGT
GATCTCTGCTTTGAAGGATTTTTTTGACAAGTCTTTAGAGGAGGCCAAAGCCCTCACATCAAGCATCCATCGTGATGGCT
GTGGGGTTTGTGGCGTCTATCCTTATGATATTGCCAGGCATAGGGCAGCATGGGTTAGGGATAAGGCCAGAGAGCTAGAT
CTCCCCTTAAAATTATTGGTAGAAGAGATAAAATAA

Upstream 100 bases:

>100_bases
AATCTAATTTGTTGTATCGTTTGTTCATTTCGCACCAAAATAGCTTGGTTGAACAATCCAGTATCCCTGTTGTGATCGCC
AAGTAGCATGGATAAGCGGC

Downstream 100 bases:

>100_bases
TGGCTAAATTCAATCAAGATCTCAATGAAGTTCTAAACCAAGCTTTAAATTTAGCCCTGGATCTTAACCACGCCCTTTGC
ACCACAGAGCATGTGCTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MKMYNIPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIARHRAAWVRDKARELD
LPLKLLVEEIK

Sequences:

>Translated_91_residues
MKMYNIPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIARHRAAWVRDKARELD
LPLKLLVEEIK
>Mature_91_residues
MKMYNIPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIARHRAAWVRDKARELD
LPLKLLVEEIK

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=81, Percent_Identity=38.2716049382716, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 10298; Mature: 10298

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMYNIPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEAKALTSSIHRDGCGVCGVY
CCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PYDIARHRAAWVRDKARELDLPLKLLVEEIK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MKMYNIPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEAKALTSSIHRDGCGVCGVY
CCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PYDIARHRAAWVRDKARELDLPLKLLVEEIK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]