Click here to switch to the map view.

The map label for this gene is 108562454

Identifier: 108562454

GI number: 108562454

Start: 33046

End: 33459

Strand: Direct

Name: 108562454

Synonym: HPAG1_0029

Alternate gene names: NA

Gene position: 33046-33459 (Clockwise)

Preceding gene: 108562451

Following gene: 108562455

Centisome position: 2.07

GC content: 39.13

Gene sequence:

>414_bases
ATGAATATTTTATTTGGGATTAGCGACACGCAAGAATGCTATAACGCTATTAAATTCGCTGTCAAATTAGCCCATTCGCT
TAAAGAGGTCCGTTTCACTCTATTGCATGTGAGCATGGAAGTGTTTATTTATAGCGAAAGCGGGATGATGGATTATGGCC
AGACAGAAGCCTTAGAAGAAGAAAAAGCTAAGGCTTTGTTAAAGCAATTTGAAGACGCTTTCAAAAAAGAAAATATAGAG
TGCGAGAGCGTTCTAAAAAGCGGCGATTTGATTGATGTGGTCTTGGATATGGCGAAGGATTATGATTTGTTATTGATTGG
GGCGAGCGAATCTAATTTGTTGTATCGTTTGTTCATTTCGCACCAAAATAGCTTGGTTGAACAATCCAGTATCCCTGTTG
TGATCGCCAAGTAG

Upstream 100 bases:

>100_bases
CTTTTTCTAAGCGAGATTGTAGCGCTTTATCTTTGAGCTTTCAGCGGGTCATTAGGGTTTATTTGGTATAATACCAAAAC
TTCATTTAAGGTTGGTTCTT

Downstream 100 bases:

>100_bases
CATGGATAAGCGGCATGAAAATGTATAACATACCCACCCCCACCATGGCGCAAGTGATCATGGTTGATGACCCCATTACG
ACAGCGGAATTTGTGATCTC

Product: hypothetical protein

Products: NA

Alternate protein names: USP Jhp_0027

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIE
CESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFISHQNSLVEQSSIPVVIAK

Sequences:

>Translated_137_residues
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIE
CESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFISHQNSLVEQSSIPVVIAK
>Mature_137_residues
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIE
CESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFISHQNSLVEQSSIPVVIAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the universal stress protein A family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y027_HELPJ (P64650)

Other databases:

- EMBL:   AE001439
- RefSeq:   NP_222749.1
- ProteinModelPortal:   P64650
- STRING:   P64650
- GeneID:   889139
- GenomeReviews:   AE001439_GR
- KEGG:   hpj:jhp0027
- eggNOG:   NOG86046
- HOGENOM:   HBG501632
- OMA:   HRIFNSH
- ProtClustDB:   CLSK495827
- BioCyc:   HPYL85963:JHP0027-MONOMER
- InterPro:   IPR014729
- InterPro:   IPR006016
- Gene3D:   G3DSA:3.40.50.620

Pfam domain/function: PF00582 Usp

EC number: NA

Molecular weight: Translated: 15488; Mature: 15488

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHH
EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS
HHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEC
HQNSLVEQSSIPVVIAK
CCHHHHHHCCCCEEEEC
>Mature Secondary Structure
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHH
EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS
HHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEC
HQNSLVEQSSIPVVIAK
CCHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682