| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is yjeS [H]
Identifier: 107023499
GI number: 107023499
Start: 2151900
End: 2153135
Strand: Reverse
Name: yjeS [H]
Synonym: Bcen_1950
Alternate gene names: 107023499
Gene position: 2153135-2151900 (Counterclockwise)
Preceding gene: 107023502
Following gene: 107023498
Centisome position: 65.35
GC content: 70.39
Gene sequence:
>1236_bases ATGAACCGACTACCGGAACGCGCCGCATCCGACAGGCCTTCGACTCGTGACGAAGGCGCGGCGCCGTGCGCGCTCGACGA TGCGGCGTTGACTGCGCTCGCCGCTCGCATCAGGGCGTGGGGGCGCGAATTGGGTTTCGGGGCGATCGGCATCAGCGATA CCGATCTCTCGGATGCCGAAGCGGGCCTCGCCGCCTGGCTGGAAGCCGGATACCACGGCGAAATGGATTATATGGCGAAA CATGGGATGAAACGCGCGCGGCCGGCCGAACTTGTGGCCGGTACGCGACGCGTGATCTCCGTGCGGCTCGCCTATTTGCC GGGCCAAACGCTCGCGGCCGACGCGCCCGCTGGCGAGCCCGGCGCGCTCGTGCCGCACGACTGGCGCGCGCGCGAACGGG CGCGGCTCGAGGATCCGCAGGCGGCCGTCGTGTCGATCTATGCGCGCGGCCGCGACTATCACAAGGTGCTGCGCAACCGG CTGCAGACACTCGCGGAGCGCATCGAGCACGAGATCGGCGGGTTCGGCTACCGCGTGTTCACCGATTCGGCGCCCGTGCT CGAGGTCGAACTCGCGCAGAAGGCCGGAGTCGGCTGGCGCGGCAAGCACACGCTGCTGCTGCAGCGCGATGCCGGCTCGC TGTTCTTTCTCGGCGAGATCTACGTCGACCTGCCGCTGCCGACCGACGCGCACACGTTGCCCGACACCGCGCCCGAGACG CCCGGTGCGCACTGCGGCAGCTGCACCCGCTGCATCGACGCGTGCCCGACCGGTGCGATCGTCGAGCCGTATCGCGTCGA TGCGCGCCGCTGCATCTCGTACCTGACGATCGAACTGAAAGGCAGCATCCCCGAGCCGCTGCGGCCGATGATCGGCAATC GCGTGTACGGCTGCGACGACTGCCAGCTCGTGTGCCCGTGGAACAAGTTCGCGCAGGCCGCGCCCGTCGCCGATTTCGAC GTGCGGCACGGCCTCGACCGCGCGACGCTCGTCGAGCTGTTCGCGTGGGACGCGGAGGCATTCGACACGCGGATGCAGGG CAGCGCGATCCGGCGCATCGGCTACGAAAGTTGGCTGCGCAATCTCGCGGTCGGGCTCGGCAATGCGCTGCGCGCCGGCG CGGACCGGCTCGCGCCGCCCGCGCGCGATGCGATCGTCGCCGCGCTGCGCGCCCGGGCCGACGATCCGTCGCCGGTCGTG CGCGAGCATGTCGAATGGGCGCTGCGAGCCGCGTGA
Upstream 100 bases:
>100_bases GCTTCGTCGGCGAGCGCGACCACGCGCTCCGCGAGCGGGGCGGGCAACGTGGCATGAGGCGGTTGGCTGGACGTGGCTGG CATTCTCGTAAAATAGTGCG
Downstream 100 bases:
>100_bases AGGCGGCGTAAAGTGTCGTCGGCGCGTGCGCAGGGCCGCGCGCGCATCCCTCGGTCAGGAGAATTCAATGTTCAACGCTG TCATCGACGCGCCGTTCGGC
Product: 4Fe-4S cluster binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MNRLPERAASDRPSTRDEGAAPCALDDAALTALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAK HGMKRARPAELVAGTRRVISVRLAYLPGQTLAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNR LQTLAERIEHEIGGFGYRVFTDSAPVLEVELAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPET PGAHCGSCTRCIDACPTGAIVEPYRVDARRCISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFD VRHGLDRATLVELFAWDAEAFDTRMQGSAIRRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVV REHVEWALRAA
Sequences:
>Translated_411_residues MNRLPERAASDRPSTRDEGAAPCALDDAALTALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAK HGMKRARPAELVAGTRRVISVRLAYLPGQTLAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNR LQTLAERIEHEIGGFGYRVFTDSAPVLEVELAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPET PGAHCGSCTRCIDACPTGAIVEPYRVDARRCISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFD VRHGLDRATLVELFAWDAEAFDTRMQGSAIRRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVV REHVEWALRAA >Mature_411_residues MNRLPERAASDRPSTRDEGAAPCALDDAALTALAARIRAWGRELGFGAIGISDTDLSDAEAGLAAWLEAGYHGEMDYMAK HGMKRARPAELVAGTRRVISVRLAYLPGQTLAADAPAGEPGALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNR LQTLAERIEHEIGGFGYRVFTDSAPVLEVELAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPET PGAHCGSCTRCIDACPTGAIVEPYRVDARRCISYLTIELKGSIPEPLRPMIGNRVYGCDDCQLVCPWNKFAQAAPVADFD VRHGLDRATLVELFAWDAEAFDTRMQGSAIRRIGYESWLRNLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVV REHVEWALRAA
Specific function: Unknown
COG id: COG1600
COG function: function code C; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790608, Length=379, Percent_Identity=52.5065963060686, Blast_Score=396, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004453 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013542 - InterPro: IPR009051 [H]
Pfam domain/function: PF08331 DUF1730 [H]
EC number: NA
Molecular weight: Translated: 44754; Mature: 44754
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRLPERAASDRPSTRDEGAAPCALDDAALTALAARIRAWGRELGFGAIGISDTDLSDAE CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHH AGLAAWLEAGYHGEMDYMAKHGMKRARPAELVAGTRRVISVRLAYLPGQTLAADAPAGEP HHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEECCCCCEECCCCCCCC GALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNRLQTLAERIEHEIGGFGYRVF CCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE TDSAPVLEVELAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPET ECCCCEEEEEEHHHCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCC PGAHCGSCTRCIDACPTGAIVEPYRVDARRCISYLTIELKGSIPEPLRPMIGNRVYGCDD CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHCCCCCCCCC CQLVCPWNKFAQAAPVADFDVRHGLDRATLVELFAWDAEAFDTRMQGSAIRRIGYESWLR CEEECCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH NLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVVREHVEWALRAA HHHHHCCHHHHHCHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MNRLPERAASDRPSTRDEGAAPCALDDAALTALAARIRAWGRELGFGAIGISDTDLSDAE CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHH AGLAAWLEAGYHGEMDYMAKHGMKRARPAELVAGTRRVISVRLAYLPGQTLAADAPAGEP HHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHEEEEEEECCCCCEECCCCCCCC GALVPHDWRARERARLEDPQAAVVSIYARGRDYHKVLRNRLQTLAERIEHEIGGFGYRVF CCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE TDSAPVLEVELAQKAGVGWRGKHTLLLQRDAGSLFFLGEIYVDLPLPTDAHTLPDTAPET ECCCCEEEEEEHHHCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCC PGAHCGSCTRCIDACPTGAIVEPYRVDARRCISYLTIELKGSIPEPLRPMIGNRVYGCDD CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHCCCCCCCCC CQLVCPWNKFAQAAPVADFDVRHGLDRATLVELFAWDAEAFDTRMQGSAIRRIGYESWLR CEEECCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH NLAVGLGNALRAGADRLAPPARDAIVAALRARADDPSPVVREHVEWALRAA HHHHHCCHHHHHCHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]