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The map label for this gene is yfdE [H]

Identifier: 107023470

GI number: 107023470

Start: 2124151

End: 2125593

Strand: Reverse

Name: yfdE [H]

Synonym: Bcen_1921

Alternate gene names: 107023470

Gene position: 2125593-2124151 (Counterclockwise)

Preceding gene: 107023472

Following gene: 107023468

Centisome position: 64.52

GC content: 72.97

Gene sequence:

>1443_bases
ATGACACCCGATTCCGCCTTGGCGCATCTTTGGCAACTCGCACGCGGCGAACGCGACACGCTGGCCCGCACGACCGTGAC
CGGGCAGGACCCGACGCTACCGTCGACGTTTCATGTCGGCACGCTCGCCGCCGCGACGATCGCCGCAGCCGGGCTCGCGG
CAGCCGAATGCCATCGGCTGCGGACGGGCGTGGCGCAATCGGTCGACGTGTCGGTGCGCGACGCGCTCGTGGCGTTCCGC
AGCGAACGCTACCTGCGCGTGGACGACGGCCCACCGCCGGAGTTGCGTCATCCGGTGACCGGCTTCTTCGAGACGGGCGA
CGGACGCTGGATTCAACTGCACGCGAATTTCCCGCATCACCTGCACGGTATTCTCGACGTGCTCGGCTGCGGCCGGCAGC
CCGCCGACGTCGCCGCGGCGATCCGCACCTGGGACGGCGCGGCGCTCGATACCGCGCTGGCCGACGCCGGCCTGTGCGCG
GCATTGATCAGAACCCCTGACGAATGGGCGGCGCACGAGCAGGCGCGCGCGATCGCGTCGCTGCCGCTGTTCGAGATCGA
GCGGATCGGCGACGCGCCGGCCGAGCCGATCGGCCGCGGCGACGCCAGCCAGCCGCTGGCCGGCGTGCGCGTGCTCGATC
TCACGCGCATCATCGCGGGCCCGGTCGCGGGCCGCACGCTGGCCTCGCACGGCGCGCAGACGCTGCTCGTCAACGGTCCG
CACCTGCCGAACATCGCGCCGCTCGTGATCGACAACGGGCGCGGCAAGCGTTCGACGTGGATCGATTTGCGCGACGCGGA
AGGCGTCGATACGCTGCACGCCCTGGCGCGCGAGGCGGACGTGTTTCTGCAGTCGTACCGCCCCGGCGCGCTCGCCGCGC
GCGGTTTCACGCCGCATGCGCTGGCGGCGCGGCGGCCCGGCATCGTCTACGTGTCGGTGTCGGCGTACGGGCATGCAGGG
CCGTGGGCGCAGCGGCGCGGGTTCGACAGCCTCGTGCAGTCGGCGAGCGGCATCGCATGGCACGAGCAGCAGGCCGCGCA
GGCGAGCGGGCCGCGCCATCTGCCGTGCCAGGCGCTCGATCATGCAACGGGGTATCTCGCGGCGTTCGGCGCGATGATCG
CGCTCGCCCGGCGGGCGCGCGAAGGGGGAAGCTGGCACGTGCGGATGTCGCTCGCGCAGACGGGCGCTGGCTGCAGTCGT
TCGGCGCGGTGCTGGACGGGCTGCAGGCGCCCGATCTCGCGCTGGCCGACGTGCGCGACCGGATCGACCGCATCGCGTCG
CCGTTCGGCGCGCTCGATACCGTGCGGCCGGCCGAGCGGTTGTCGGCGACGCCGCCGTCGTTCGCGCGGCCGCCCGTGCC
GCTCGGCACCGACGACGCGCGCTGGCTGTGAGGGGAGGCGGCGCGGCTCGCGTTACTTGCGTAGCTCGACGACGAAATCG
TAG

Upstream 100 bases:

>100_bases
TACAACTATTCGTTATGTATTGATTCGCGCAATCAAGATTGATCGCGCCTGACGCGAATTCTAGACTCGATTCCGTCTCC
TCAACGGCGTCTCCTTCACC

Downstream 100 bases:

>100_bases
TAGTCGTTGCGGCAGTAGGTATCGGTCAGTTCGATCGCGCGCTGGTCGGACGTATAGCCGATCCGCGTGATCAGCAGCAG
GGCGTCGTGGGGGGCGATGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MTPDSALAHLWQLARGERDTLARTTVTGQDPTLPSTFHVGTLAAATIAAAGLAAAECHRLRTGVAQSVDVSVRDALVAFR
SERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHHLHGILDVLGCGRQPADVAAAIRTWDGAALDTALADAGLCA
ALIRTPDEWAAHEQARAIASLPLFEIERIGDAPAEPIGRGDASQPLAGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
HLPNIAPLVIDNGRGKRSTWIDLRDAEGVDTLHALAREADVFLQSYRPGALAARGFTPHALAARRPGIVYVSVSAYGHAG
PWAQRRGFDSLVQSASGIAWHEQQAAQASGPRHLPCQALDHATGYLAAFGAMIALARRAREGGSWHVRMSLAQTGAGCSR
SARCWTGCRRPISRWPTCATGSTASRRRSARSIPCGRPSGCRRRRRRSRGRPCRSAPTTRAGCEGRRRGSRYLRSSTTKS

Sequences:

>Translated_480_residues
MTPDSALAHLWQLARGERDTLARTTVTGQDPTLPSTFHVGTLAAATIAAAGLAAAECHRLRTGVAQSVDVSVRDALVAFR
SERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHHLHGILDVLGCGRQPADVAAAIRTWDGAALDTALADAGLCA
ALIRTPDEWAAHEQARAIASLPLFEIERIGDAPAEPIGRGDASQPLAGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
HLPNIAPLVIDNGRGKRSTWIDLRDAEGVDTLHALAREADVFLQSYRPGALAARGFTPHALAARRPGIVYVSVSAYGHAG
PWAQRRGFDSLVQSASGIAWHEQQAAQASGPRHLPCQALDHATGYLAAFGAMIALARRAREGGSWHVRMSLAQTGAGCSR
SARCWTGCRRPISRWPTCATGSTASRRRSARSIPCGRPSGCRRRRRRSRGRPCRSAPTTRAGCEGRRRGSRYLRSSTTKS
>Mature_479_residues
TPDSALAHLWQLARGERDTLARTTVTGQDPTLPSTFHVGTLAAATIAAAGLAAAECHRLRTGVAQSVDVSVRDALVAFRS
ERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHHLHGILDVLGCGRQPADVAAAIRTWDGAALDTALADAGLCAA
LIRTPDEWAAHEQARAIASLPLFEIERIGDAPAEPIGRGDASQPLAGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGPH
LPNIAPLVIDNGRGKRSTWIDLRDAEGVDTLHALAREADVFLQSYRPGALAARGFTPHALAARRPGIVYVSVSAYGHAGP
WAQRRGFDSLVQSASGIAWHEQQAAQASGPRHLPCQALDHATGYLAAFGAMIALARRAREGGSWHVRMSLAQTGAGCSRS
ARCWTGCRRPISRWPTCATGSTASRRRSARSIPCGRPSGCRRRRRRSRGRPCRSAPTTRAGCEGRRRGSRYLRSSTTKS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=233, Percent_Identity=30.4721030042918, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI300863124, Length=233, Percent_Identity=30.4721030042918, Blast_Score=106, Evalue=6e-23,
Organism=Homo sapiens, GI300863126, Length=147, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI42794625, Length=197, Percent_Identity=27.4111675126904, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI266456254, Length=197, Percent_Identity=27.4111675126904, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI266458397, Length=180, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI266458393, Length=180, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87082093, Length=154, Percent_Identity=25.974025974026, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788717, Length=149, Percent_Identity=28.1879194630872, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=182, Percent_Identity=31.8681318681319, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=179, Percent_Identity=29.608938547486, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648431, Length=194, Percent_Identity=32.9896907216495, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24585488, Length=218, Percent_Identity=28.4403669724771, Blast_Score=78, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 51365; Mature: 51233

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDSALAHLWQLARGERDTLARTTVTGQDPTLPSTFHVGTLAAATIAAAGLAAAECHRL
CCCHHHHHHHHHHHCCCHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RTGVAQSVDVSVRDALVAFRSERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHH
HHCCHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHH
LHGILDVLGCGRQPADVAAAIRTWDGAALDTALADAGLCAALIRTPDEWAAHEQARAIAS
HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LPLFEIERIGDAPAEPIGRGDASQPLAGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
CCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCC
HLPNIAPLVIDNGRGKRSTWIDLRDAEGVDTLHALAREADVFLQSYRPGALAARGFTPHA
CCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHH
LAARRPGIVYVSVSAYGHAGPWAQRRGFDSLVQSASGIAWHEQQAAQASGPRHLPCQALD
HHHCCCCEEEEEEECCCCCCCCHHHCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHH
HATGYLAAFGAMIALARRAREGGSWHVRMSLAQTGAGCSRSARCWTGCRRPISRWPTCAT
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
GSTASRRRSARSIPCGRPSGCRRRRRRSRGRPCRSAPTTRAGCEGRRRGSRYLRSSTTKS
CCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPDSALAHLWQLARGERDTLARTTVTGQDPTLPSTFHVGTLAAATIAAAGLAAAECHRL
CCHHHHHHHHHHHCCCHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RTGVAQSVDVSVRDALVAFRSERYLRVDDGPPPELRHPVTGFFETGDGRWIQLHANFPHH
HHCCHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHH
LHGILDVLGCGRQPADVAAAIRTWDGAALDTALADAGLCAALIRTPDEWAAHEQARAIAS
HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LPLFEIERIGDAPAEPIGRGDASQPLAGVRVLDLTRIIAGPVAGRTLASHGAQTLLVNGP
CCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCC
HLPNIAPLVIDNGRGKRSTWIDLRDAEGVDTLHALAREADVFLQSYRPGALAARGFTPHA
CCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHH
LAARRPGIVYVSVSAYGHAGPWAQRRGFDSLVQSASGIAWHEQQAAQASGPRHLPCQALD
HHHCCCCEEEEEEECCCCCCCCHHHCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHH
HATGYLAAFGAMIALARRAREGGSWHVRMSLAQTGAGCSRSARCWTGCRRPISRWPTCAT
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
GSTASRRRSARSIPCGRPSGCRRRRRRSRGRPCRSAPTTRAGCEGRRRGSRYLRSSTTKS
CCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]