| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is yeiA [H]
Identifier: 107023146
GI number: 107023146
Start: 1770519
End: 1771832
Strand: Reverse
Name: yeiA [H]
Synonym: Bcen_1595
Alternate gene names: 107023146
Gene position: 1771832-1770519 (Counterclockwise)
Preceding gene: 107023147
Following gene: 107023145
Centisome position: 53.78
GC content: 65.53
Gene sequence:
>1314_bases ATGGCCGACCTTCGCTGCACCATCGCAGGCATCACTTCGCCGAATCCCTTCTGGCTGGCGTCCGCGCCGCCCACAGACAA GGCCTACAACGTCAATCGCGCCTTCGAGGCGGGCTGGGGTGGCGTCGTCTGGAAGACGCTCGGGCTCGATCCGCACGTTG TCAACGTCAGTTCGCGTTACGGCGCCGTGCAGTGGAATGGCCAGCGCATCGCGGGGCTGAACAACATCGAGCTGATCACC GACCGTCCGCTCGACGTGAACCTGAGAGAGATCGCGCAGGTGAAGCGCGACTGGCCGGACCGCGCGCTGATCGTGTCGCT GATGGTGCCGTGCAACGAGCGCGACTGGAAATGGATCCTGCCGCTCGTCGAGGACACCGGGGCCGACGCGGTCGAACTCA ACTTCGGCTGCCCGCACGGGATGAGCGAGCGCGGCATGGGCGCGGCGGTCGGGCAGGTGCCCGAATACGTCGAGATGGTC ACGCGCTGGGTGAAGGAAGGCACGAAGCTGCCGTGCCTCGTGAAGCTCACGCCGAACATCAGCGATATCCGGATGGGCTC GCGCGCCGCGTACAAGGGCGGCGCGGACGGCGTGTCGCTGATCAACACGATCAACTCGATCGTCGCGGTCGATCTCGACC AGATGGCGCCGATGCCGACCGTCGACGGCAAGGGCACGCACGGCGGCTATTGCGGGCCGGCGGTCAAGCCGATCGCACTG AACATGGTCGCGGAGATCGCCCGCGACCCGGAAACACCGAACCTGCCGATCTCGGGCATCGGCGGCATCTCGTCGTGGCG TGATGCGGCCGAGTTCATGGTGCTCGGCGCCGGCAGCGTGCAGGTGTGCACCGCCGCGATGCATTACGGATTCCGGATCG TGTCGGATCTCGCCGATGGCCTGTCGAACTGGATGGACGAAAAGGGCTACGCGACGCTCGATGACATTCGCGGCCGCGCG GTGCCGAACGTGACCGACTGGAAATACCTGAACCTGAAGTACGACATCAAGGCGCGCATCGACCAGGATCGCTGCATCCA GTGCGGGCTGTGCCATATCGCATGCGAGGACACGTCGCACCAGGCGATCACGGCGACGAAGGACGGTGCGCGGCACTTCG AAGTGGTCGATTCGGAATGCGTCGGGTGCAATCTTTGCATGCATGTGTGTCCGGTCGAGCAATGCATCACGATGGAGCGC GTCGATTCGGGCGACTACGCGAACTGGACCACGCATCCGAACAATCCGGCGAGCGCGGAGGCTGGTGCGAGTGGCCCGGC GGCGGCACCCGAGAAGCACGCGAAGGCGGCCTGA
Upstream 100 bases:
>100_bases TCGATCGACGCGACGCTCGCGGCGCGCGACGCGAAGGCGGCCTGACCGCGCGACGCACCGCACGCACACCGAACACGACC CCATTCTCACGGAGCCGAAC
Downstream 100 bases:
>100_bases CCGAGGTCCGGCGGTGCGGCATGGACCGCGCCGCCGCTTTTCGTTTCCCCGGGCCGGCATCGCACGATGCCGGCGCCGAC GTTTTCGTGGAGCGCGTTCA
Product: dihydropyrimidine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MADLRCTIAGITSPNPFWLASAPPTDKAYNVNRAFEAGWGGVVWKTLGLDPHVVNVSSRYGAVQWNGQRIAGLNNIELIT DRPLDVNLREIAQVKRDWPDRALIVSLMVPCNERDWKWILPLVEDTGADAVELNFGCPHGMSERGMGAAVGQVPEYVEMV TRWVKEGTKLPCLVKLTPNISDIRMGSRAAYKGGADGVSLINTINSIVAVDLDQMAPMPTVDGKGTHGGYCGPAVKPIAL NMVAEIARDPETPNLPISGIGGISSWRDAAEFMVLGAGSVQVCTAAMHYGFRIVSDLADGLSNWMDEKGYATLDDIRGRA VPNVTDWKYLNLKYDIKARIDQDRCIQCGLCHIACEDTSHQAITATKDGARHFEVVDSECVGCNLCMHVCPVEQCITMER VDSGDYANWTTHPNNPASAEAGASGPAAAPEKHAKAA
Sequences:
>Translated_437_residues MADLRCTIAGITSPNPFWLASAPPTDKAYNVNRAFEAGWGGVVWKTLGLDPHVVNVSSRYGAVQWNGQRIAGLNNIELIT DRPLDVNLREIAQVKRDWPDRALIVSLMVPCNERDWKWILPLVEDTGADAVELNFGCPHGMSERGMGAAVGQVPEYVEMV TRWVKEGTKLPCLVKLTPNISDIRMGSRAAYKGGADGVSLINTINSIVAVDLDQMAPMPTVDGKGTHGGYCGPAVKPIAL NMVAEIARDPETPNLPISGIGGISSWRDAAEFMVLGAGSVQVCTAAMHYGFRIVSDLADGLSNWMDEKGYATLDDIRGRA VPNVTDWKYLNLKYDIKARIDQDRCIQCGLCHIACEDTSHQAITATKDGARHFEVVDSECVGCNLCMHVCPVEQCITMER VDSGDYANWTTHPNNPASAEAGASGPAAAPEKHAKAA >Mature_436_residues ADLRCTIAGITSPNPFWLASAPPTDKAYNVNRAFEAGWGGVVWKTLGLDPHVVNVSSRYGAVQWNGQRIAGLNNIELITD RPLDVNLREIAQVKRDWPDRALIVSLMVPCNERDWKWILPLVEDTGADAVELNFGCPHGMSERGMGAAVGQVPEYVEMVT RWVKEGTKLPCLVKLTPNISDIRMGSRAAYKGGADGVSLINTINSIVAVDLDQMAPMPTVDGKGTHGGYCGPAVKPIALN MVAEIARDPETPNLPISGIGGISSWRDAAEFMVLGAGSVQVCTAAMHYGFRIVSDLADGLSNWMDEKGYATLDDIRGRAV PNVTDWKYLNLKYDIKARIDQDRCIQCGLCHIACEDTSHQAITATKDGARHFEVVDSECVGCNLCMHVCPVEQCITMERV DSGDYANWTTHPNNPASAEAGASGPAAAPEKHAKAA
Specific function: Unknown
COG id: COG0167
COG function: function code F; Dihydroorotate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Homo sapiens, GI119943098, Length=337, Percent_Identity=39.4658753709199, Blast_Score=230, Evalue=2e-60, Organism=Escherichia coli, GI87082059, Length=400, Percent_Identity=43.75, Blast_Score=337, Evalue=7e-94, Organism=Caenorhabditis elegans, GI71984108, Length=326, Percent_Identity=39.8773006134969, Blast_Score=223, Evalue=1e-58, Organism=Saccharomyces cerevisiae, GI6322633, Length=323, Percent_Identity=25.3869969040248, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI24640763, Length=309, Percent_Identity=42.7184466019417, Blast_Score=243, Evalue=2e-64, Organism=Drosophila melanogaster, GI18858217, Length=309, Percent_Identity=42.7184466019417, Blast_Score=243, Evalue=2e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013785 - InterPro: IPR005720 - InterPro: IPR012135 - InterPro: IPR012285 [H]
Pfam domain/function: PF01180 DHO_dh [H]
EC number: NA
Molecular weight: Translated: 47202; Mature: 47071
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADLRCTIAGITSPNPFWLASAPPTDKAYNVNRAFEAGWGGVVWKTLGLDPHVVNVSSRY CCCCEEEEEECCCCCCEEEECCCCCCCCEECCCHHHCCCCCEEEEECCCCCEEEEECCCC GAVQWNGQRIAGLNNIELITDRPLDVNLREIAQVKRDWPDRALIVSLMVPCNERDWKWIL CEEEECCEEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEE PLVEDTGADAVELNFGCPHGMSERGMGAAVGQVPEYVEMVTRWVKEGTKLPCLVKLTPNI EEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCH SDIRMGSRAAYKGGADGVSLINTINSIVAVDLDQMAPMPTVDGKGTHGGYCGPAVKPIAL HHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHH NMVAEIARDPETPNLPISGIGGISSWRDAAEFMVLGAGSVQVCTAAMHYGFRIVSDLADG HHHHHHHCCCCCCCCCCCCCCCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH LSNWMDEKGYATLDDIRGRAVPNVTDWKYLNLKYDIKARIDQDRCIQCGLCHIACEDTSH HHHHHHCCCCEEHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCHHHCCCEEEEEECCCCC QAITATKDGARHFEVVDSECVGCNLCMHVCPVEQCITMERVDSGDYANWTTHPNNPASAE CEEEECCCCCCEEEECCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC AGASGPAAAPEKHAKAA CCCCCCCCCCHHHCCCC >Mature Secondary Structure ADLRCTIAGITSPNPFWLASAPPTDKAYNVNRAFEAGWGGVVWKTLGLDPHVVNVSSRY CCCEEEEEECCCCCCEEEECCCCCCCCEECCCHHHCCCCCEEEEECCCCCEEEEECCCC GAVQWNGQRIAGLNNIELITDRPLDVNLREIAQVKRDWPDRALIVSLMVPCNERDWKWIL CEEEECCEEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEE PLVEDTGADAVELNFGCPHGMSERGMGAAVGQVPEYVEMVTRWVKEGTKLPCLVKLTPNI EEEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCH SDIRMGSRAAYKGGADGVSLINTINSIVAVDLDQMAPMPTVDGKGTHGGYCGPAVKPIAL HHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHH NMVAEIARDPETPNLPISGIGGISSWRDAAEFMVLGAGSVQVCTAAMHYGFRIVSDLADG HHHHHHHCCCCCCCCCCCCCCCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH LSNWMDEKGYATLDDIRGRAVPNVTDWKYLNLKYDIKARIDQDRCIQCGLCHIACEDTSH HHHHHHCCCCEEHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCHHHCCCEEEEEECCCCC QAITATKDGARHFEVVDSECVGCNLCMHVCPVEQCITMERVDSGDYANWTTHPNNPASAE CEEEECCCCCCEEEECCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC AGASGPAAAPEKHAKAA CCCCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 1719366 [H]