BacMap

Definition	Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Accession	NC_008060
Length	3,294,563

Click here to switch to the map view.

The map label for this gene is yusZ [H]

Identifier: 107023135

GI number: 107023135

Start: 1757502

End: 1758278

Strand: Reverse

Name: yusZ [H]

Synonym: Bcen_1584

Alternate gene names: 107023135

Gene position: 1758278-1757502 (Counterclockwise)

Preceding gene: 107023141

Following gene: 107023134

Centisome position: 53.37

GC content: 61.13

Gene sequence:

>777_bases
ATGTCTCGAAAGATATTGATCACGGGTGCCAGTTCAGGCTTTGGTCGGGGTGCGGCAATTGAACTTGCGCGCCTCGGCCA
TCAGGTCGTGGCGACGGCCGAGACGTGGCCGCAGGTTCGCGGCCTGCGTGCGGATGCAGCCGAGGCCGGTGTGGTGCTGG
AAGTGATCAAGCTGAATCTGCTCGACGCGATCGACATCGCTCACGCGGGCTCGTTCGATCCCGACGTCCTGGTGCTGAAC
GCCGGCGTCATGGAAGGCGGATCGATCGTCGACATCCCGATGCAACGCGTTCGGGAGTCCTTCGAAATCAACGTTTTCGG
CCATCTTCAACTGGTGCAGGCGATCGTGCCGAAGATGGTGGGGCGCAGGTCCGGAAAAGTCGTATGGACCTCGTCGATGG
GGGGCATTCTGGTTGTCCCGTTTGTCGGTGCCTACTGCGCGACCAAGCATGCGATCGAGGCCATCGCCGGGTCGATGAAA
GCGGAACTCGAACCTCTTGGCGTCAAGGTCGCGACCGTGAATCCGGGCGTTTTCGGCACCGGATTCAACGACACCGGCGC
CGAGAGCTACGTGCAGTGGTACGACGCCGATTCCGCCGTTGTGCCGATGCCGGATTTCGGCGACAGCCTGATGAACCAGG
CCGACCCCAAGGAGATGATCGACGCCATGGTCGAGATCATTCCGGCCGATACGCATTTGTATCGAACCATGCGCCCGTTT
GCGACGATTGACGCGGCGAAGCAGTGGCAAGAGACGGAGTGGACGCAAAATGCCTGA

Upstream 100 bases:

>100_bases
TGGTGAGTAACTCTCATCATGTCATCAAGCATTGGTGATCTTGTTTTGATACTAGGGGCTCCCTACACTGGGTGCAACTA
CTTCAGTCAAGGAGCGCCAG

Downstream 100 bases:

>100_bases
GCTCACGCTGGAGCGGGCGGACCGTATTGTGGCCCGGGGGCGTGCCGCGGCGCGGGACGCGGGACTCGATGCCGTGTTTG
CCATTCTCGATACGGGTGCG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSRKILITGASSGFGRGAAIELARLGHQVVATAETWPQVRGLRADAAEAGVVLEVIKLNLLDAIDIAHAGSFDPDVLVLN
AGVMEGGSIVDIPMQRVRESFEINVFGHLQLVQAIVPKMVGRRSGKVVWTSSMGGILVVPFVGAYCATKHAIEAIAGSMK
AELEPLGVKVATVNPGVFGTGFNDTGAESYVQWYDADSAVVPMPDFGDSLMNQADPKEMIDAMVEIIPADTHLYRTMRPF
ATIDAAKQWQETEWTQNA

Sequences:

>Translated_258_residues
MSRKILITGASSGFGRGAAIELARLGHQVVATAETWPQVRGLRADAAEAGVVLEVIKLNLLDAIDIAHAGSFDPDVLVLN
AGVMEGGSIVDIPMQRVRESFEINVFGHLQLVQAIVPKMVGRRSGKVVWTSSMGGILVVPFVGAYCATKHAIEAIAGSMK
AELEPLGVKVATVNPGVFGTGFNDTGAESYVQWYDADSAVVPMPDFGDSLMNQADPKEMIDAMVEIIPADTHLYRTMRPF
ATIDAAKQWQETEWTQNA
>Mature_257_residues
SRKILITGASSGFGRGAAIELARLGHQVVATAETWPQVRGLRADAAEAGVVLEVIKLNLLDAIDIAHAGSFDPDVLVLNA
GVMEGGSIVDIPMQRVRESFEINVFGHLQLVQAIVPKMVGRRSGKVVWTSSMGGILVVPFVGAYCATKHAIEAIAGSMKA
ELEPLGVKVATVNPGVFGTGFNDTGAESYVQWYDADSAVVPMPDFGDSLMNQADPKEMIDAMVEIIPADTHLYRTMRPFA
TIDAAKQWQETEWTQNA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=185, Percent_Identity=29.7297297297297, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI223718074, Length=189, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=29.6875, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=34.7593582887701, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI119392083, Length=193, Percent_Identity=31.6062176165803, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI19743808, Length=189, Percent_Identity=31.7460317460317, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI44680136, Length=196, Percent_Identity=29.5918367346939, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI44680133, Length=196, Percent_Identity=29.5918367346939, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI17738292, Length=196, Percent_Identity=29.5918367346939, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI142976729, Length=188, Percent_Identity=30.8510638297872, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40548397, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI214010158, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI214010156, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI22758144, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI40807363, Length=241, Percent_Identity=28.2157676348548, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=28.042328042328, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI150247226, Length=246, Percent_Identity=28.0487804878049, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI210032110, Length=211, Percent_Identity=25.5924170616114, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI32455239, Length=233, Percent_Identity=30.0429184549356, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI5031765, Length=233, Percent_Identity=30.0429184549356, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI22507405, Length=187, Percent_Identity=31.0160427807487, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI210032112, Length=204, Percent_Identity=24.0196078431373, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=210, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786701, Length=193, Percent_Identity=31.6062176165803, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082100, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790717, Length=240, Percent_Identity=25.8333333333333, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=185, Percent_Identity=31.3513513513514, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17570069, Length=211, Percent_Identity=31.7535545023697, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=227, Percent_Identity=27.3127753303965, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=208, Percent_Identity=30.2884615384615, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193210355, Length=199, Percent_Identity=27.1356783919598, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=26.7489711934156, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=202, Percent_Identity=28.7128712871287, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=27.8947368421053, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=27.7486910994764, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=230, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=27.319587628866, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=173, Percent_Identity=28.3236994219653, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580925, Length=192, Percent_Identity=34.375, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571526, Length=209, Percent_Identity=31.1004784688995, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI21357041, Length=204, Percent_Identity=32.3529411764706, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24640492, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=31.8918918918919, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24644339, Length=216, Percent_Identity=28.7037037037037, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24648944, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=28.9940828402367, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27652; Mature: 27521

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKILITGASSGFGRGAAIELARLGHQVVATAETWPQVRGLRADAAEAGVVLEVIKLNL
CCCEEEEEECCCCCCCCHHHHHHHCCHHEEEEHHHHHHHCCCCCCHHHCCHHHHHHHHHH
LDAIDIAHAGSFDPDVLVLNAGVMEGGSIVDIPMQRVRESFEINVFGHLQLVQAIVPKMV
HHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCHHHHHHHEEEEEEHHHHHHHHHHHHHH
GRRSGKVVWTSSMGGILVVPFVGAYCATKHAIEAIAGSMKAELEPLGVKVATVNPGVFGT
CCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEC
GFNDTGAESYVQWYDADSAVVPMPDFGDSLMNQADPKEMIDAMVEIIPADTHLYRTMRPF
CCCCCCHHHHHEEECCCCCEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCH
ATIDAAKQWQETEWTQNA
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRKILITGASSGFGRGAAIELARLGHQVVATAETWPQVRGLRADAAEAGVVLEVIKLNL
CCEEEEEECCCCCCCCHHHHHHHCCHHEEEEHHHHHHHCCCCCCHHHCCHHHHHHHHHH
LDAIDIAHAGSFDPDVLVLNAGVMEGGSIVDIPMQRVRESFEINVFGHLQLVQAIVPKMV
HHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCHHHHHHHEEEEEEHHHHHHHHHHHHHH
GRRSGKVVWTSSMGGILVVPFVGAYCATKHAIEAIAGSMKAELEPLGVKVATVNPGVFGT
CCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEC
GFNDTGAESYVQWYDADSAVVPMPDFGDSLMNQADPKEMIDAMVEIIPADTHLYRTMRPF
CCCCCCHHHHHEEECCCCCEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCH
ATIDAAKQWQETEWTQNA
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]