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The map label for this gene is yciR [C]

Identifier: 107023113

GI number: 107023113

Start: 1737556

End: 1738536

Strand: Reverse

Name: yciR [C]

Synonym: Bcen_1562

Alternate gene names: 107023113

Gene position: 1738536-1737556 (Counterclockwise)

Preceding gene: 107023114

Following gene: 107023112

Centisome position: 52.77

GC content: 61.98

Gene sequence:

>981_bases
GTGATCCGGAAACCGTTCCGCGTGTCCGAACACGAATTGCGCGTGTCGGCCAGTATCGGCATTGCGCTCTATCCCGGCAA
CGGCAGCGATTTTCGCGACCTGATGACCAACGCCGATGCAGCGATGTATCACGCCAAGGCACTCGGCCGGAACGCGTACT
GCTTCTTCGAGGCATCGATGAACGCGAATGTCCGCGAGCACCTGAAAATCGTGCAGGAGCTCCGTCTGGCGCTGGAGCGG
CGTGAGCTGGTCCTGCATTACCAGCCGAAGTTCGACGTCCCGCACGGACCGATCATCGGCGTCGAGGCGCTGTTGCGATG
GATGCACCCGACACGCGGTCTCATTTCACCCGATCAGTTCATCTCGATTGCGGAAAAGACCGGCTTGATCGTGCCGATCG
GCGAGTGGGTGCTGGACGAGGCCTGCCGGCAGATGCGCGTGTGGTGCGATGCCGGTCGAACCGACTGGACGATGGCCGTC
AACCTGTCACCGCTGCAATTCGGTCACGCGAGTCTGATCCGGGTCGTGGAGGCCACATTGCAGCGGCACGCGCTGGAGCC
GCACTGCCTGACGCTGGAGATCACGGAATCGACCGCGATGCGCGATGCGGACGCCAGCTTGAGAATCCTGCAGCAGCTTC
ACGACATGGGCGTGCGCATTTCCATCGACGACTTCGGAACGGGTTATTCAAGCTTGCTGTATCTGAAGCGCTTGCCGGCC
AGCGAGCTCAAGATCGACCGGGGATTCATCCGCGATCTCGAACACGATACCGAAGATGCCGCGATCATTTCGGCGATCGT
CGCGCTCGGCCGGGCACTCGACCTGAAGATCGTCGCGGAGGGCGTTGAAACGGCGGCCCAGCAGCAGTTCCTGACCCGCC
TCGGTTGCAACTCGCTGCAGGGTTTTCTGCTCGGGCGCCCGATGCCGGCGGATCACTTCGTCGAAATGACCACGCAAGGC
ACGGCGATCAAGCCTGTTTGA

Upstream 100 bases:

>100_bases
CGCAGGACACGATTGCCCGCCTGGGGGCGACGAATTCGTGCTGGCCGTGGCAGTGGACGAGCCCGCGGACGCGGCCGACG
TGGCGGACAAGATATTGGCG

Downstream 100 bases:

>100_bases
TTCCGGGTGGGAATGCGTCGGGGTCCAGAGTTAAACGAAATGTGATCACTCTCCGCCGCAAAATTTTGCACAATGACGGC
AGCGCGGCTTTCCGTCGCGA

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MIRKPFRVSEHELRVSASIGIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMNANVREHLKIVQELRLALER
RELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFISIAEKTGLIVPIGEWVLDEACRQMRVWCDAGRTDWTMAV
NLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITESTAMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPA
SELKIDRGFIRDLEHDTEDAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQGFLLGRPMPADHFVEMTTQG
TAIKPV

Sequences:

>Translated_326_residues
MIRKPFRVSEHELRVSASIGIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMNANVREHLKIVQELRLALER
RELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFISIAEKTGLIVPIGEWVLDEACRQMRVWCDAGRTDWTMAV
NLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITESTAMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPA
SELKIDRGFIRDLEHDTEDAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQGFLLGRPMPADHFVEMTTQG
TAIKPV
>Mature_326_residues
MIRKPFRVSEHELRVSASIGIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMNANVREHLKIVQELRLALER
RELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFISIAEKTGLIVPIGEWVLDEACRQMRVWCDAGRTDWTMAV
NLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITESTAMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPA
SELKIDRGFIRDLEHDTEDAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQGFLLGRPMPADHFVEMTTQG
TAIKPV

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=312, Percent_Identity=42.9487179487179, Blast_Score=260, Evalue=7e-71,
Organism=Escherichia coli, GI87081921, Length=311, Percent_Identity=37.2990353697749, Blast_Score=214, Evalue=4e-57,
Organism=Escherichia coli, GI226510982, Length=307, Percent_Identity=35.5048859934853, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI87081980, Length=245, Percent_Identity=39.5918367346939, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=34.9794238683128, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1790496, Length=255, Percent_Identity=34.5098039215686, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787055, Length=255, Percent_Identity=34.1176470588235, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87082096, Length=254, Percent_Identity=33.4645669291339, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=31.7164179104478, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=32.1138211382114, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=32.8063241106719, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=34.3873517786561, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=26.797385620915, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 36435; Mature: 36435

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKPFRVSEHELRVSASIGIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASM
CCCCCCCCCHHHEEEEEEEEEEEECCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECC
NANVREHLKIVQELRLALERRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQF
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
ISIAEKTGLIVPIGEWVLDEACRQMRVWCDAGRTDWTMAVNLSPLQFGHASLIRVVEATL
HHHHHHCCEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
QRHALEPHCLTLEITESTAMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPA
HHHCCCCCEEEEEECCCHHCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCH
SELKIDRGFIRDLEHDTEDAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
GFLLGRPMPADHFVEMTTQGTAIKPV
HHHCCCCCCHHHHEEEECCCCEECCC
>Mature Secondary Structure
MIRKPFRVSEHELRVSASIGIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASM
CCCCCCCCCHHHEEEEEEEEEEEECCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECC
NANVREHLKIVQELRLALERRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQF
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
ISIAEKTGLIVPIGEWVLDEACRQMRVWCDAGRTDWTMAVNLSPLQFGHASLIRVVEATL
HHHHHHCCEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
QRHALEPHCLTLEITESTAMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPA
HHHCCCCCEEEEEECCCHHCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCH
SELKIDRGFIRDLEHDTEDAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
GFLLGRPMPADHFVEMTTQGTAIKPV
HHHCCCCCCHHHHEEEECCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]