| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is yyaM [H]
Identifier: 107023098
GI number: 107023098
Start: 1719992
End: 1720900
Strand: Reverse
Name: yyaM [H]
Synonym: Bcen_1547
Alternate gene names: 107023098
Gene position: 1720900-1719992 (Counterclockwise)
Preceding gene: 107023100
Following gene: 107023097
Centisome position: 52.23
GC content: 68.98
Gene sequence:
>909_bases ATGAACAAGTCTCCTTTTCTGCTCCCCTTCTGCGCGATCGCGCTGTGGGCCGGCAACGTCGTCGTGTCGAAGCTGTCCGC CTCGACGATCGACCCGTCGGCCATCACGTTCTACCGGTTGCTGCTTGCGGTGGCGCTGATGAGCGTCTTCACGCTGCGCC CCGCGTGGCGCAATCGCGCGGTGCTCGTCGCGCACCTGCCGAAGCTCGCGACGCTCGGCTTTCTCGCGATGGCGCTGTTC CAGAGCCTGTCCTACGAGGCCGCGAAGACGACCAGCGCGACCAACATGGCGATCATCACCGCGCTCGTACCGCTGATGAC GATGCTGCTGAGCTCGCTGCTGCTCGGCGATCCGCCCGGCGCCGGCATGATCGGCGGCGGGGTGCTGTCGCTCGCGGGCG TCGTCTATCTGATCGCCGAAGGGCATCCGACGGCGATCGCCGCGCGCGGCGTGCATCCGGGCGACCTGCTGATGCTGGCC GCATCGGCCGCGTACGCGCTTTACGGCGTGCTGCTCAAGCGCTGGCGCATCGGCGCGCTGTCGGCCTGGCAGTCGACCTA CGTGCAGGCGCTGGCCGCGCTCGGATTCCTGGTGCCGATGCTGTTGCGCTTGCCCGCGCAGGCCGCGTGGCCGACGCGCG CGAGCGTGCCGCTGATCCTCTACGCCGGCGTGCTGGCGTCGGTGGTGCTCCCGTATCTGTGGATGCAGGGCGTGCGGCTG CTCGGCCCGAGCCGTTGCGCGATGTTCATGAACCTGCTGCCCGTGATGACGGCCGCCGGCGCGATCGTGCTGCTCGGCGA ATCGCTGCGGTTGTATCACCTGATCGGCGGCAGCGTCGCGCTGCTCGGCGTCGCGATCGCGCAGCGGTTTCCGTTTCAGG CCGGCGGGGCGCAAGGAATCCGTCAATGA
Upstream 100 bases:
>100_bases GTCGTGACATTTTGGCGTGAGACAGGCAGTGGGCGGGCGGGCACGATGGCGTTCCGATTCACGCCAGCCTCCCTGTCACG ATATTAATCCGTCAAACGCG
Downstream 100 bases:
>100_bases GCGCCCATCCCGACATGCAGGACCTGGTGGCCGCGCTGCCGGACGGACGGGCGTCCGTCGCCGCGCCGGCGCTCGCGCGT CAGCTCGAACGGATCGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MNKSPFLLPFCAIALWAGNVVVSKLSASTIDPSAITFYRLLLAVALMSVFTLRPAWRNRAVLVAHLPKLATLGFLAMALF QSLSYEAAKTTSATNMAIITALVPLMTMLLSSLLLGDPPGAGMIGGGVLSLAGVVYLIAEGHPTAIAARGVHPGDLLMLA ASAAYALYGVLLKRWRIGALSAWQSTYVQALAALGFLVPMLLRLPAQAAWPTRASVPLILYAGVLASVVLPYLWMQGVRL LGPSRCAMFMNLLPVMTAAGAIVLLGESLRLYHLIGGSVALLGVAIAQRFPFQAGGAQGIRQ
Sequences:
>Translated_302_residues MNKSPFLLPFCAIALWAGNVVVSKLSASTIDPSAITFYRLLLAVALMSVFTLRPAWRNRAVLVAHLPKLATLGFLAMALF QSLSYEAAKTTSATNMAIITALVPLMTMLLSSLLLGDPPGAGMIGGGVLSLAGVVYLIAEGHPTAIAARGVHPGDLLMLA ASAAYALYGVLLKRWRIGALSAWQSTYVQALAALGFLVPMLLRLPAQAAWPTRASVPLILYAGVLASVVLPYLWMQGVRL LGPSRCAMFMNLLPVMTAAGAIVLLGESLRLYHLIGGSVALLGVAIAQRFPFQAGGAQGIRQ >Mature_302_residues MNKSPFLLPFCAIALWAGNVVVSKLSASTIDPSAITFYRLLLAVALMSVFTLRPAWRNRAVLVAHLPKLATLGFLAMALF QSLSYEAAKTTSATNMAIITALVPLMTMLLSSLLLGDPPGAGMIGGGVLSLAGVVYLIAEGHPTAIAARGVHPGDLLMLA ASAAYALYGVLLKRWRIGALSAWQSTYVQALAALGFLVPMLLRLPAQAAWPTRASVPLILYAGVLASVVLPYLWMQGVRL LGPSRCAMFMNLLPVMTAAGAIVLLGESLRLYHLIGGSVALLGVAIAQRFPFQAGGAQGIRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31778; Mature: 31778
Theoretical pI: Translated: 10.76; Mature: 10.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKSPFLLPFCAIALWAGNVVVSKLSASTIDPSAITFYRLLLAVALMSVFTLRPAWRNRA CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCE VLVAHLPKLATLGFLAMALFQSLSYEAAKTTSATNMAIITALVPLMTMLLSSLLLGDPPG EEEHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC AGMIGGGVLSLAGVVYLIAEGHPTAIAARGVHPGDLLMLAASAAYALYGVLLKRWRIGAL CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH SAWQSTYVQALAALGFLVPMLLRLPAQAAWPTRASVPLILYAGVLASVVLPYLWMQGVRL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH LGPSRCAMFMNLLPVMTAAGAIVLLGESLRLYHLIGGSVALLGVAIAQRFPFQAGGAQGI CCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC RQ CC >Mature Secondary Structure MNKSPFLLPFCAIALWAGNVVVSKLSASTIDPSAITFYRLLLAVALMSVFTLRPAWRNRA CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCE VLVAHLPKLATLGFLAMALFQSLSYEAAKTTSATNMAIITALVPLMTMLLSSLLLGDPPG EEEHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC AGMIGGGVLSLAGVVYLIAEGHPTAIAARGVHPGDLLMLAASAAYALYGVLLKRWRIGAL CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH SAWQSTYVQALAALGFLVPMLLRLPAQAAWPTRASVPLILYAGVLASVVLPYLWMQGVRL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH LGPSRCAMFMNLLPVMTAAGAIVLLGESLRLYHLIGGSVALLGVAIAQRFPFQAGGAQGI CCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC RQ CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]