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The map label for this gene is ydcR [H]

Identifier: 107022951

GI number: 107022951

Start: 1538143

End: 1539567

Strand: Reverse

Name: ydcR [H]

Synonym: Bcen_1399

Alternate gene names: 107022951

Gene position: 1539567-1538143 (Counterclockwise)

Preceding gene: 107022952

Following gene: 107022949

Centisome position: 46.73

GC content: 65.19

Gene sequence:

>1425_bases
ATGAAGCTCTACGAGAAATTTGCGAACGACGTAGAGCGACTCATTCGGCAAGGCGTATATCGACACGGCGACCGTGTGCC
GTCGGTGCGGCAGGCGAGCCAGCAGCACCGGATCAGCATCACGACCGTGCTGCATGCGTATCTGCTGCTGGAAAGCCGCG
GGCTGCTCGAAAGCCGGCCGCAGTCGGGCTATTTCGTGAACCTGCGGCGCGACGACGGCCACGCGCCGGTGCGCGAGCTG
CGGCCGTCGAAGCCGATCGCGATCTCGTCGTCGGTGGACGTGAGCCGGCTCGTGCTGTCGACGCTGCGCTCGATCGGCAC
GGACGACGCGGTGCCGCTCGGCTCGCCGTACCCGGACCCGAGCCTGTTTCCGTTCGAGAAGCTGAACCGCTACGCGTATG
CGGCTGGCCGCGACAAGTCGCTGTGGGGCGTGACGGACGGGCTGCCGCCGGGCCATCCGCGGCTGATCCGGCAGATCGCG
CGGCGCTACCTGGAAAACGGGATGTCGGTGGACCCGAACGAGATCATCGTGACGGTCGGCGCAACGGAGGCGATCAACCT
GTGCCTGCAGGCGGTGGCGAAGCCGGGCGACACGATCGCGGTGGAGTCGCCGACGTTCTACGCGATGCTGCACGCGATCG
AGCGGATGGGGATGAAGGCGATCGAGGTGGCCACACACCCGGAATATGGAATCGACATCGCGGCGCTGGCCGCGATCGCG
AAATCGCAGCCGATCGCCGCGTGCATGGTGATGCCGAACTTCCAGAATCCGCTGGGCTTCCAGATGCCGGACGAGCGCAA
GCGCGAACTGGTGGCGTTCGCAACGAAAGCCGACCTGCCGATCATCGAGAACGGCGTGTACAACGAACTGTATTTCGGCA
ACATGCATCCGAGCACGCTGAAGTCGTTCGATCGCCATGACATCGTGCTGCATTGCGCGTCGTTCTCTAAGAGCCTGACG
GCCGCGTACCGGATCGGCTGGGCGCTGCCGGGCCGCTACCGCGAGCAGGTCGAGAAGCTGAAGTTCCTGAATACGCTGGC
GACGCCGTCGTTGCCGCAGCTCGCGATCGCGGAGTTTCTCGAACGCGACGGCTACGAACATCACCTGCGGCGGGTTCGCA
AGGCGTATGCGCAGCAGGCGAACCTGATGCGCGCGATGGTGTCGCGGTTCTTTCCGGAAGGCACGCGCATTTCGAGCCCG
GCAGGCGGGTACGTGCTGTGGGTCGAGCTGCCCGCGCAGGTCGATGCGATGCGGCTGTACCAGCTCGCGCTGGAGCAGGG
GATCACGATCGGGCCCGGCTACATGTTTTCGATCGCGGATACTTACCGGAACTTCATCCGGTTGAACTACAGCAGCCCGT
GGTCGCCCGAGATCGAGCGCGCGGTCGTCACCGTCGGCAAGCTCGCCGCATCCTGCATCGACTGA

Upstream 100 bases:

>100_bases
GGGACACCCGCCCCCGGCGACGGCTATCCGGCTTCGTGCATCGGCGCGGCGGTGCCCCCCATGCGGCGCACGCCGGTTCA
TCGCTGGCGGGGCGAGGCGG

Downstream 100 bases:

>100_bases
CCGCGCCGCGGCGCGCGGCGCGACGTCATGTCAGCCGGTACGACTGCGCGCCGGTGCCCGCGAGCGTGCCGCCGTCGACG
ATCAGGTATTCGTTGCGGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MKLYEKFANDVERLIRQGVYRHGDRVPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQSGYFVNLRRDDGHAPVREL
RPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIA
RRYLENGMSVDPNEIIVTVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
KSQPIAACMVMPNFQNPLGFQMPDERKRELVAFATKADLPIIENGVYNELYFGNMHPSTLKSFDRHDIVLHCASFSKSLT
AAYRIGWALPGRYREQVEKLKFLNTLATPSLPQLAIAEFLERDGYEHHLRRVRKAYAQQANLMRAMVSRFFPEGTRISSP
AGGYVLWVELPAQVDAMRLYQLALEQGITIGPGYMFSIADTYRNFIRLNYSSPWSPEIERAVVTVGKLAASCID

Sequences:

>Translated_474_residues
MKLYEKFANDVERLIRQGVYRHGDRVPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQSGYFVNLRRDDGHAPVREL
RPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIA
RRYLENGMSVDPNEIIVTVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
KSQPIAACMVMPNFQNPLGFQMPDERKRELVAFATKADLPIIENGVYNELYFGNMHPSTLKSFDRHDIVLHCASFSKSLT
AAYRIGWALPGRYREQVEKLKFLNTLATPSLPQLAIAEFLERDGYEHHLRRVRKAYAQQANLMRAMVSRFFPEGTRISSP
AGGYVLWVELPAQVDAMRLYQLALEQGITIGPGYMFSIADTYRNFIRLNYSSPWSPEIERAVVTVGKLAASCID
>Mature_474_residues
MKLYEKFANDVERLIRQGVYRHGDRVPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQSGYFVNLRRDDGHAPVREL
RPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIA
RRYLENGMSVDPNEIIVTVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
KSQPIAACMVMPNFQNPLGFQMPDERKRELVAFATKADLPIIENGVYNELYFGNMHPSTLKSFDRHDIVLHCASFSKSLT
AAYRIGWALPGRYREQVEKLKFLNTLATPSLPQLAIAEFLERDGYEHHLRRVRKAYAQQANLMRAMVSRFFPEGTRISSP
AGGYVLWVELPAQVDAMRLYQLALEQGITIGPGYMFSIADTYRNFIRLNYSSPWSPEIERAVVTVGKLAASCID

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=392, Percent_Identity=24.7448979591837, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI33469970, Length=392, Percent_Identity=24.7448979591837, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4507369, Length=354, Percent_Identity=24.0112994350282, Blast_Score=78, Evalue=2e-14,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=40.1709401709402, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1790797, Length=473, Percent_Identity=36.9978858350951, Blast_Score=301, Evalue=8e-83,
Organism=Escherichia coli, GI1788722, Length=307, Percent_Identity=24.4299674267101, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321000, Length=318, Percent_Identity=22.9559748427673, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321236, Length=408, Percent_Identity=22.3039215686275, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356535, Length=288, Percent_Identity=22.2222222222222, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18859735, Length=200, Percent_Identity=23.5, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52990; Mature: 52990

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLYEKFANDVERLIRQGVYRHGDRVPSVRQASQQHRISITTVLHAYLLLESRGLLESRP
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
QSGYFVNLRRDDGHAPVRELRPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDP
CCCEEEEEECCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIARRYLENGMSVDPNEIIVTVG
CCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC
ATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
CHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
KSQPIAACMVMPNFQNPLGFQMPDERKRELVAFATKADLPIIENGVYNELYFGNMHPSTL
CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCEEECCCCHHHH
KSFDRHDIVLHCASFSKSLTAAYRIGWALPGRYREQVEKLKFLNTLATPSLPQLAIAEFL
HHCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ERDGYEHHLRRVRKAYAQQANLMRAMVSRFFPEGTRISSPAGGYVLWVELPAQVDAMRLY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
QLALEQGITIGPGYMFSIADTYRNFIRLNYSSPWSPEIERAVVTVGKLAASCID
HHHHHCCCEECCCHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLYEKFANDVERLIRQGVYRHGDRVPSVRQASQQHRISITTVLHAYLLLESRGLLESRP
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
QSGYFVNLRRDDGHAPVRELRPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDP
CCCEEEEEECCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIARRYLENGMSVDPNEIIVTVG
CCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC
ATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
CHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
KSQPIAACMVMPNFQNPLGFQMPDERKRELVAFATKADLPIIENGVYNELYFGNMHPSTL
CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCEEECCCCHHHH
KSFDRHDIVLHCASFSKSLTAAYRIGWALPGRYREQVEKLKFLNTLATPSLPQLAIAEFL
HHCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ERDGYEHHLRRVRKAYAQQANLMRAMVSRFFPEGTRISSPAGGYVLWVELPAQVDAMRLY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
QLALEQGITIGPGYMFSIADTYRNFIRLNYSSPWSPEIERAVVTVGKLAASCID
HHHHHCCCEECCCHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]