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The map label for this gene is sotB [H]

Identifier: 107022868

GI number: 107022868

Start: 1448593

End: 1449795

Strand: Reverse

Name: sotB [H]

Synonym: Bcen_1316

Alternate gene names: 107022868

Gene position: 1449795-1448593 (Counterclockwise)

Preceding gene: 107022875

Following gene: 107022866

Centisome position: 44.01

GC content: 67.91

Gene sequence:

>1203_bases
ATGGCAACCCCCGACGCCGTCAGTTCCGAACAATCGTGGTGGGGCGTTCTGGCCCTGGCGCTCACCGCCTTCATCTTCAA
TACCACCGAATTCGTGCCCGTCGCGCTGTTGAGCGCGATCGGCGACAGCCTGCAGATGCAGCCGACCGCCGTCGGCCTGA
TGCTGACGATCTACGCGTGGGCCGTCGCGGTCGTGTCGCTGCCGCTGACGTTCGTCACGCGCCACGTCGAGCGCCGCAAG
CTGTTGAGCGTGGCGCTGCTGGTGTTCATCGGCAGCCATGTCGTGACCGGCGTCGCGTGGAATTTCACGGTGCTGATGAT
CGGCCGGCTCGGCATCGCGTGTGCGCATGCGGTGTTCTGGTCGATTTCGATCCCGCTCGCGGTGCGGCTCGCGCCGAGCG
ACCGCAAAAGCCGTGCACTCAGCCTGATCGCGATGGGCTCGGCGATCGCGATGGTCGCCGGGATTCCGCTCGGACGCGTG
ATCGGCGAGGCGTTCGGCTGGCGCGTCACGTTCCTGATCATCGCGGGCACGGCGGGCATCGCGCTGCTGTTGCTGCGCGC
CACGTTGCCGTTGCTGCCGAGCCAGGGCGCCGGGTCGCTGAGCAGCATCGGCGTGTTCCTGCGCAAGCCGGCGCTGGTCG
CGCTGTATGCGATCACCGTGCTGGTCGTGTCCGCGCACTTCACGTCGTACACGTACATCGAACCGTTCGTGCAGAGCATC
AACCATGCGAGCAACAGCCGGATCACGTACGTGCTGATCCTGTTCGGCATCGCCGGCCTGCCGGCCGCGGTCTGCTTCAA
TCGCGTCTATCCGCACCGGCCCGACGATTTCCTGCTGGCGTCGATCGTCGCGCTGTCGGGCTGCCTGCTGATCCTGTTCC
CGTGCGCGCTGAACATCGTCACGCTGTCCGTGCACACACTGGTGTGGGGCGGCGCGATCGTCTGCTTCGGGCTGGCGATG
CAGGCGTGGGTACTGAAGCTGGCGCCGGACGCCACCGACCTGGCCGTGTCGATCTACTCGGGGCTGTACAACGTCGGCAT
CGGCGCCGGCGCGCTGCTCGGCAACCATATCGCGGGCGACTTCGGGCTGCCGTGGATCGGCACCTTCGGCGGCGTGGTCG
CAATCTTCGCGGCCGGGGTCGCGTGGGCCGCGTTGCGGCTGCACGCGAAACGGGAAGCGGCGCTCGCGGCCCCCGCGCCG
TGA

Upstream 100 bases:

>100_bases
GCACCGCGCCCGGCGGCGGCGGGTCGAACACCGCTGGTACAATCGCGCCGATGCGCCGGGCGGGCCGCCCGCGCACGCCC
AACCTTCGTCGAATCCCCGT

Downstream 100 bases:

>100_bases
AGCCGCTGCCCGGCACGCCGCCGGTGCATCACGCGATCGAATAGCCGCCGTCGGCCACGAGCGCGTGCCCCGACACATAG
CTGGCATCGTCCGACGCGAG

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MATPDAVSSEQSWWGVLALALTAFIFNTTEFVPVALLSAIGDSLQMQPTAVGLMLTIYAWAVAVVSLPLTFVTRHVERRK
LLSVALLVFIGSHVVTGVAWNFTVLMIGRLGIACAHAVFWSISIPLAVRLAPSDRKSRALSLIAMGSAIAMVAGIPLGRV
IGEAFGWRVTFLIIAGTAGIALLLLRATLPLLPSQGAGSLSSIGVFLRKPALVALYAITVLVVSAHFTSYTYIEPFVQSI
NHASNSRITYVLILFGIAGLPAAVCFNRVYPHRPDDFLLASIVALSGCLLILFPCALNIVTLSVHTLVWGGAIVCFGLAM
QAWVLKLAPDATDLAVSIYSGLYNVGIGAGALLGNHIAGDFGLPWIGTFGGVVAIFAAGVAWAALRLHAKREAALAAPAP

Sequences:

>Translated_400_residues
MATPDAVSSEQSWWGVLALALTAFIFNTTEFVPVALLSAIGDSLQMQPTAVGLMLTIYAWAVAVVSLPLTFVTRHVERRK
LLSVALLVFIGSHVVTGVAWNFTVLMIGRLGIACAHAVFWSISIPLAVRLAPSDRKSRALSLIAMGSAIAMVAGIPLGRV
IGEAFGWRVTFLIIAGTAGIALLLLRATLPLLPSQGAGSLSSIGVFLRKPALVALYAITVLVVSAHFTSYTYIEPFVQSI
NHASNSRITYVLILFGIAGLPAAVCFNRVYPHRPDDFLLASIVALSGCLLILFPCALNIVTLSVHTLVWGGAIVCFGLAM
QAWVLKLAPDATDLAVSIYSGLYNVGIGAGALLGNHIAGDFGLPWIGTFGGVVAIFAAGVAWAALRLHAKREAALAAPAP
>Mature_399_residues
ATPDAVSSEQSWWGVLALALTAFIFNTTEFVPVALLSAIGDSLQMQPTAVGLMLTIYAWAVAVVSLPLTFVTRHVERRKL
LSVALLVFIGSHVVTGVAWNFTVLMIGRLGIACAHAVFWSISIPLAVRLAPSDRKSRALSLIAMGSAIAMVAGIPLGRVI
GEAFGWRVTFLIIAGTAGIALLLLRATLPLLPSQGAGSLSSIGVFLRKPALVALYAITVLVVSAHFTSYTYIEPFVQSIN
HASNSRITYVLILFGIAGLPAAVCFNRVYPHRPDDFLLASIVALSGCLLILFPCALNIVTLSVHTLVWGGAIVCFGLAMQ
AWVLKLAPDATDLAVSIYSGLYNVGIGAGALLGNHIAGDFGLPWIGTFGGVVAIFAAGVAWAALRLHAKREAALAAPAP

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=376, Percent_Identity=50.531914893617, Blast_Score=316, Evalue=1e-87,
Organism=Escherichia coli, GI1787947, Length=334, Percent_Identity=28.7425149700599, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI145693198, Length=366, Percent_Identity=25.4098360655738, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1786595, Length=397, Percent_Identity=25.4408060453401, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42019; Mature: 41888

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPDAVSSEQSWWGVLALALTAFIFNTTEFVPVALLSAIGDSLQMQPTAVGLMLTIYAW
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AVAVVSLPLTFVTRHVERRKLLSVALLVFIGSHVVTGVAWNFTVLMIGRLGIACAHAVFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SISIPLAVRLAPSDRKSRALSLIAMGSAIAMVAGIPLGRVIGEAFGWRVTFLIIAGTAGI
HEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEEECHHHH
ALLLLRATLPLLPSQGAGSLSSIGVFLRKPALVALYAITVLVVSAHFTSYTYIEPFVQSI
HHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NHASNSRITYVLILFGIAGLPAAVCFNRVYPHRPDDFLLASIVALSGCLLILFPCALNIV
CCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLSVHTLVWGGAIVCFGLAMQAWVLKLAPDATDLAVSIYSGLYNVGIGAGALLGNHIAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
FGLPWIGTFGGVVAIFAAGVAWAALRLHAKREAALAAPAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ATPDAVSSEQSWWGVLALALTAFIFNTTEFVPVALLSAIGDSLQMQPTAVGLMLTIYAW
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
AVAVVSLPLTFVTRHVERRKLLSVALLVFIGSHVVTGVAWNFTVLMIGRLGIACAHAVFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SISIPLAVRLAPSDRKSRALSLIAMGSAIAMVAGIPLGRVIGEAFGWRVTFLIIAGTAGI
HEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEEECHHHH
ALLLLRATLPLLPSQGAGSLSSIGVFLRKPALVALYAITVLVVSAHFTSYTYIEPFVQSI
HHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NHASNSRITYVLILFGIAGLPAAVCFNRVYPHRPDDFLLASIVALSGCLLILFPCALNIV
CCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLSVHTLVWGGAIVCFGLAMQAWVLKLAPDATDLAVSIYSGLYNVGIGAGALLGNHIAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
FGLPWIGTFGGVVAIFAAGVAWAALRLHAKREAALAAPAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA